CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH33863	Soybean	cytosol	15.65	30.91
KRH52398	Soybean	cytosol	56.17	28.94
KRH61732	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	55.8	28.58
KRH47407	Soybean	cytosol	50.46	24.25
KRH23604	Soybean	endoplasmic reticulum	50.28	24.12
KRH44501	Soybean	cytosol	50.09	24.01
KRH09700	Soybean	cytosol	49.54	23.81
Os03t0254700-01	Rice	cytosol	49.17	23.57
GSMUA_Achr4P09920_001	Banana	cytosol	49.17	23.22
TraesCS4D01G221200.1	Wheat	cytosol	48.43	23.19
TraesCS4A01G083300.2	Wheat	cytosol	48.43	23.17
TraesCS4B01G220900.3	Wheat	cytosol	48.43	23.15
HORVU0Hr1G008690.1	Barley	cytosol, endoplasmic reticulum	48.25	23.06
GSMUA_Achr6P36440_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	48.8	22.96
VIT_04s0008g06330.t01	Wine grape	extracellular	48.07	22.96
EER92538	Sorghum	cytosol	47.33	22.84
KRH20137	Soybean	endoplasmic reticulum	46.41	22.24
KRH03669	Soybean	nucleus	46.41	22.22
GSMUA_Achr6P22950_001	Banana	plasma membrane	48.43	21.24
KRG96753	Soybean	endoplasmic reticulum	44.01	21.15
KRG92932	Soybean	nucleus	44.01	21.15
KRH68470	Soybean	nucleus	43.65	20.97
CDX79301	Canola	cytosol	7.73	19.35
PGSC0003DMT400028457	Potato	cytosol	41.62	19.15
Solyc08g029050.2.1	Tomato	cytosol	41.99	18.67
KRH33861	Soybean	cytosol	28.55	18.41
KRH30800	Soybean	mitochondrion	4.79	7.98
Zm00001d027915_P001	Maize	cytosol	3.13	5.48
Zm00001d052868_P001	Maize	cytosol, peroxisome, plasma membrane	2.03	4.66
Zm00001d045829_P001	Maize	mitochondrion	2.58	4.29
Zm00001d004623_P001	Maize	cytosol, plastid	1.29	2.59
Zm00001d050983_P001	Maize	cytosol	1.1	2.4

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A0R0FGA5	EMBL:ACUP02010691	InterPro:CTLH_C	EnsemblPlantsGene:GLYMA_17G213000
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001680	InterPro:IPR006594	InterPro:IPR006595
InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KRH05196	ProteinID:KRH05196	ProteinID:KRH05196.1	InterPro:LisH
PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PFscan:PS50896	PFscan:PS50897
PANTHER:PTHR44083	PANTHER:PTHR44083:SF2	SMART:SM00320	SMART:SM00667	SMART:SM00668	SUPFAM:SSF50978
InterPro:Topless_fam	UniParc:UPI0006EDEC9B	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:+:35353582..35358772

Molecular Weight (calculated)

61871.5 Da

IEP (calculated)

6.918

GRAVY (calculated)

-0.066

Length

543 amino acids

Sequence
(BLAST)

001: MAHLDKDLTL LVLQYFNEEN LKEAARTLGH ESGLYFDLKY FEDIVLEGKW DETENYLSAF TKVMDNKFSI KMYFELRKQK YFEALEVNDH HKALDILLKD
101: LKVFANGNEA LFKDLSYFLI VDNIRNLKPS YGDVNSARKD LMVELKEIIT HHPLLRGKLK FPIIESHNRL CYLLNQSFHS IFLISLFERN LFEICTPSQC
201: QFLKLPMHPE ATKILRLAYC NMGDSIVALA SNGIHLVWRW PRNGFNLDGK ASAQFCSQLW HPKDGPQFMI NELLSIKCVN PASCFAYSNG YIISTSGGMV
301: SLFNTVTFKT LTTIMSPPPM VTSLAYYPKD NNIFGIGFDD STILIYHVRQ AEVLFKLEGH STRVTAIAFS YSSNILVSGD ANAQIILWNT DGWKKLKDKQ
401: LQIQGNQVSV CETQIQFHPD QINFLVVHRS HLAIYEATEL KCVNQWLPEV PILISQATFS SDGHTVYSIF GDGAVAIFDA SNFEIRCRVY RSCYLPTISR
501: WGVYPISVAA HPQKPAQFAV GLSDGSVYVF EPQMPGGDWI KNH

Best Arabidopsis Sequence Match ( AT1G15750.1 )
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEDEVHNGNW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDKHDR PKAVDILVKD
0101: LKVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPTLRNSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCGPPNGA RAPSPVNNPL LGGIPKAGGF PPLGAHGPFQ PTASPVPTPL AGWMSSPSSV PHPAVSAGAI ALGGPSIPAA LKHPRTPPTN ASLDYPSADS
0301: EHVSKRTRPM GISDEVNLGV NMLPMSFSGQ AHGHSPAFKA PDDLPKTVAR TLSQGSSPMS MDFHPIKQTL LLVGTNVGDI GLWEVGSRER LVQKTFKVWD
0401: LSKCSMPLQA ALVKEPVVSV NRVIWSPDGS LFGVAYSRHI VQLYSYHGGE DMRQHLEIDA HVGGVNDISF STPNKQLCVI TCGDDKTIKV WDAATGVKRH
0501: TFEGHEAPVY SVCPHYKENI QFIFSTALDG KIKAWLYDNM GSRVDYDAPG RWCTTMAYSA DGTRLFSCGT SKDGESFIVE WNESEGAVKR TYQGFHKRSL
0601: GVVQFDTTKN RYLAAGDDFS IKFWDMDAVQ LLTAIDGDGG LQASPRIRFN KEGSLLAVSG NENVIKIMAN SDGLRLLHTF ENISSESSKP AINSIAAAAA
0701: AAATSAGHAD RSANVVSIQG MNGDSRNMVD VKPVITEESN DKSKIWKLTE VSEPSQCRSL RLPENLRVAK ISRLIFTNSG NAILALASNA IHLLWKWQRN
0801: ERNATGKATA SLPPQQWQPA SGILMTNDVA ETNPEEAVPC FALSKNDSYV MSASGGKISL FNMMTFKTMA TFMPPPPAAT FLAFHPQDNN IIAIGMDDST
0901: IQIYNVRVDE VKSKLKGHSK RITGLAFSNV LNVLVSSGAD AQLCVWNTDG WEKQRSKVLP LPQGRPNSAP SDTRVQFHQD QAHFLVVHET QLAIYETTKL
1001: ECMKQWAVRE SLAPITHATF SCDSQLVYAS FMDATVCVFS SANLRLRCRV NPSAYLPASL SNSNVHPLVI AAHPQEPNMF AVGLSDGGVH IFEPLESEGK
1101: WGVAPPAENG SASGAPTAPS VGASASDQPQ R

Arabidopsis Description

TPLProtein TOPLESS [Source:UniProtKB/Swiss-Prot;Acc:Q94AI7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.