Factsheet for Zm00001d027915_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d004623_P001	Maize	cytosol, plastid	69.68	80.0
Zm00001d050983_P001	Maize	cytosol	62.9	78.0
Zm00001d045829_P001	Maize	mitochondrion	46.13	43.87
Zm00001d052868_P001	Maize	cytosol, peroxisome, plasma membrane	28.39	37.29
Zm00001d047897_P013	Maize	cytosol	50.32	13.79
Zm00001d028481_P017	Maize	cytosol	47.74	13.09
Bra003569.1-P	Field mustard	cytosol	41.61	11.85
AT1G15750.3	Thale cress	cytosol	42.58	11.67
AT1G80490.2	Thale cress	cytosol	41.61	11.52
CDX79383	Canola	cytosol	41.61	11.52
Bra026751.1-P	Field mustard	cytosol	41.94	11.5
CDX67950	Canola	cytosol	41.61	11.48
Solyc03g117360.2.1	Tomato	nucleus	41.61	11.42
KRH47407	Soybean	cytosol	41.29	11.33
VIT_09s0002g08370.t01	Wine grape	cytosol	41.29	11.25
KRH44501	Soybean	cytosol	40.97	11.21
CDY36584	Canola	cytosol	40.32	11.18
KRH23604	Soybean	endoplasmic reticulum	40.65	11.13
Bra026112.1-P	Field mustard	cytosol	40.0	11.07
CDX81729	Canola	cytosol	39.68	11.01
CDY33387	Canola	cytosol	39.68	11.0
KRH09700	Soybean	cytosol	40.0	10.97
CDY53312	Canola	cytosol	34.84	9.85
Zm00001d024523_P003	Maize	cytosol	35.16	9.45
VIT_04s0008g06330.t01	Wine grape	extracellular	31.29	8.53
Zm00001d040279_P012	Maize	cytosol	28.06	7.73
KRH61732	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	26.13	7.64
KRH52398	Soybean	cytosol	24.52	7.21
PGSC0003DMT400028457	Potato	cytosol	26.77	7.03
Solyc08g029050.2.1	Tomato	cytosol	26.45	6.72
Zm00001d008338_P001	Maize	cytosol	20.97	4.67
VIT_04s0008g06380.t01	Wine grape	cytosol	2.26	3.89
VIT_04s0008g06390.t01	Wine grape	extracellular	2.58	3.65
CDX79301	Canola	cytosol	2.26	3.23
KRH05196	Soybean	cytosol	5.48	3.13
VIT_04s0008g06400.t01	Wine grape	mitochondrion	1.29	1.97
VIT_04s0008g06340.t01	Wine grape	cytosol	0.97	1.74
Solyc03g117380.2.1	Tomato	cytosol	0.0	0.0

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A1D6JQK4	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR015943	ProteinID:ONL94264.1	PANTHER:PTHR44083	PANTHER:PTHR44083:SF2	InterPro:Quinoprotein_ADH-like_supfam	SUPFAM:SSF50998
InterPro:Topless_fam	UniParc:UPI000842D6FB	InterPro:WD40/YVTN_repeat-like_dom_sf	EnsemblPlantsGene:Zm00001d027915	EnsemblPlants:Zm00001d027915_P001	EnsemblPlants:Zm00001d027915_T001

Description

Topless-related protein 2

Coordinates

chr1:-:17406705..17409156

Molecular Weight (calculated)

34213.5 Da

IEP (calculated)

7.961

GRAVY (calculated)

0.082

Length

310 amino acids

Sequence
(BLAST)

001: MPQPAAFVSV QPSDGQPTPS NVSNKKMKHG GEALFLDGAE EVAVTIGRNS QQPLSTAPPP VQMDLRRIPL SKGKENLKIF QPVDHAELGS RSQCPLPRHV
101: NLSVNMLPVT YPQSHNYQQD DFHKTVARTL SQGSTSMSMD FHPLQQTLLL VGTNVGDIGL WDVGTKDRLV VRNFKVWDLS KCTIILQASL VKDPVVTVNR
201: IIWSPDGTLF GVAYSRHIGG VNDIAFGFYL AWAMQHFHSS CFLNFFLQFI DILKSSATIT GSLTSKSLLN DLLVIQILMH ALYIHDLLVI STILLTANCN
301: ITPLCFVSGY

Best Arabidopsis Sequence Match ( AT1G15750.1 )
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEDEVHNGNW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDKHDR PKAVDILVKD
0101: LKVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPTLRNSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCGPPNGA RAPSPVNNPL LGGIPKAGGF PPLGAHGPFQ PTASPVPTPL AGWMSSPSSV PHPAVSAGAI ALGGPSIPAA LKHPRTPPTN ASLDYPSADS
0301: EHVSKRTRPM GISDEVNLGV NMLPMSFSGQ AHGHSPAFKA PDDLPKTVAR TLSQGSSPMS MDFHPIKQTL LLVGTNVGDI GLWEVGSRER LVQKTFKVWD
0401: LSKCSMPLQA ALVKEPVVSV NRVIWSPDGS LFGVAYSRHI VQLYSYHGGE DMRQHLEIDA HVGGVNDISF STPNKQLCVI TCGDDKTIKV WDAATGVKRH
0501: TFEGHEAPVY SVCPHYKENI QFIFSTALDG KIKAWLYDNM GSRVDYDAPG RWCTTMAYSA DGTRLFSCGT SKDGESFIVE WNESEGAVKR TYQGFHKRSL
0601: GVVQFDTTKN RYLAAGDDFS IKFWDMDAVQ LLTAIDGDGG LQASPRIRFN KEGSLLAVSG NENVIKIMAN SDGLRLLHTF ENISSESSKP AINSIAAAAA
0701: AAATSAGHAD RSANVVSIQG MNGDSRNMVD VKPVITEESN DKSKIWKLTE VSEPSQCRSL RLPENLRVAK ISRLIFTNSG NAILALASNA IHLLWKWQRN
0801: ERNATGKATA SLPPQQWQPA SGILMTNDVA ETNPEEAVPC FALSKNDSYV MSASGGKISL FNMMTFKTMA TFMPPPPAAT FLAFHPQDNN IIAIGMDDST
0901: IQIYNVRVDE VKSKLKGHSK RITGLAFSNV LNVLVSSGAD AQLCVWNTDG WEKQRSKVLP LPQGRPNSAP SDTRVQFHQD QAHFLVVHET QLAIYETTKL
1001: ECMKQWAVRE SLAPITHATF SCDSQLVYAS FMDATVCVFS SANLRLRCRV NPSAYLPASL SNSNVHPLVI AAHPQEPNMF AVGLSDGGVH IFEPLESEGK
1101: WGVAPPAENG SASGAPTAPS VGASASDQPQ R

Arabidopsis Description

TPLProtein TOPLESS [Source:UniProtKB/Swiss-Prot;Acc:Q94AI7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.