Factsheet for VIT_04s0008g06400.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g08370.t01	Wine grape	cytosol	59.61	10.63
EER92538	Sorghum	cytosol	55.17	9.96
HORVU0Hr1G008690.1	Barley	cytosol, endoplasmic reticulum	55.66	9.95
TraesCS4D01G221200.1	Wheat	cytosol	55.17	9.88
TraesCS4A01G083300.2	Wheat	cytosol	55.17	9.87
TraesCS4B01G220900.3	Wheat	cytosol	55.17	9.86
Os03t0254700-01	Rice	cytosol	54.19	9.71
GSMUA_Achr4P09920_001	Banana	cytosol	54.68	9.65
GSMUA_Achr6P36440_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	54.68	9.62
GSMUA_Achr6P22950_001	Banana	plasma membrane	55.66	9.13
VIT_11s0016g05620.t01	Wine grape	cytosol	50.74	9.1
VIT_09s0002g07020.t01	Wine grape	cytosol	50.74	9.05
VIT_04s0008g06330.t01	Wine grape	extracellular	48.28	8.62
VIT_16s0039g02410.t01	Wine grape	cytosol	47.29	8.46
VIT_14s0060g01680.t01	Wine grape	cytosol	44.34	7.95
Zm00001d052868_P001	Maize	cytosol, peroxisome, plasma membrane	4.43	3.81
Zm00001d027915_P001	Maize	cytosol	1.97	1.29
Zm00001d045829_P001	Maize	mitochondrion	1.97	1.23
VIT_04s0008g06390.t01	Wine grape	extracellular	0.99	0.91
VIT_04s0008g06340.t01	Wine grape	cytosol	0.49	0.58
Zm00001d050983_P001	Maize	cytosol	0.49	0.4
Zm00001d004623_P001	Maize	cytosol, plastid	0.49	0.37
VIT_04s0008g06370.t01	Wine grape	cytosol	0.49	0.28
VIT_04s0008g06380.t01	Wine grape	cytosol	0.0	0.0
VIT_04s0008g06360.t01	Wine grape	cytosol	0.0	0.0
VIT_04s0008g06350.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

EntrezGene:100262752	wikigene:100262752	Gene3D:2.130.10.10	MapMan:35.1	ProteinID:CBI21123	ProteinID:CBI21123.3
UniProt:D7SV24	EMBL:FN595231	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	EntrezGene:LOC100262752	wikigene:LOC100262752	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR44083	PANTHER:PTHR44083:SF2	SMART:SM00320	SUPFAM:SSF50978	TIGR:TC70584
InterPro:Topless_fam	UniParc:UPI0001BE1B4F	ArrayExpress:VIT_04s0008g06400	EnsemblPlantsGene:VIT_04s0008g06400	EnsemblPlants:VIT_04s0008g06400.t01	unigene:Vvi.8587
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002283218
RefSeq:XP_002283218.1	:	:	:	:	:

Description

No Description!

Coordinates

chr4:+:6281463..6283155

Molecular Weight (calculated)

22915.6 Da

IEP (calculated)

7.407

GRAVY (calculated)

-0.148

Length

203 amino acids

Sequence
(BLAST)

001: MSEQMIKKLR RHSKRITGLA FSYVLDVLVS SGADAQAIVW NSLSGGWERQ RSRYLWIPNE EMRQANLMDT RVQFSQEQTS FLVVCQPKLA IYEAMTLYCV
101: REWNVDGASS PISDATFSCD GRLVYASFLD GAVCIFMAQD LQIRCRISPS AYLPPGDRSR IYPLAVAAHP QKPNQFALGL SVGGVMVFEP LEPEEQWGLP
201: RHH

Best Arabidopsis Sequence Match ( AT1G15750.1 )
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEDEVHNGNW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDKHDR PKAVDILVKD
0101: LKVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPTLRNSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCGPPNGA RAPSPVNNPL LGGIPKAGGF PPLGAHGPFQ PTASPVPTPL AGWMSSPSSV PHPAVSAGAI ALGGPSIPAA LKHPRTPPTN ASLDYPSADS
0301: EHVSKRTRPM GISDEVNLGV NMLPMSFSGQ AHGHSPAFKA PDDLPKTVAR TLSQGSSPMS MDFHPIKQTL LLVGTNVGDI GLWEVGSRER LVQKTFKVWD
0401: LSKCSMPLQA ALVKEPVVSV NRVIWSPDGS LFGVAYSRHI VQLYSYHGGE DMRQHLEIDA HVGGVNDISF STPNKQLCVI TCGDDKTIKV WDAATGVKRH
0501: TFEGHEAPVY SVCPHYKENI QFIFSTALDG KIKAWLYDNM GSRVDYDAPG RWCTTMAYSA DGTRLFSCGT SKDGESFIVE WNESEGAVKR TYQGFHKRSL
0601: GVVQFDTTKN RYLAAGDDFS IKFWDMDAVQ LLTAIDGDGG LQASPRIRFN KEGSLLAVSG NENVIKIMAN SDGLRLLHTF ENISSESSKP AINSIAAAAA
0701: AAATSAGHAD RSANVVSIQG MNGDSRNMVD VKPVITEESN DKSKIWKLTE VSEPSQCRSL RLPENLRVAK ISRLIFTNSG NAILALASNA IHLLWKWQRN
0801: ERNATGKATA SLPPQQWQPA SGILMTNDVA ETNPEEAVPC FALSKNDSYV MSASGGKISL FNMMTFKTMA TFMPPPPAAT FLAFHPQDNN IIAIGMDDST
0901: IQIYNVRVDE VKSKLKGHSK RITGLAFSNV LNVLVSSGAD AQLCVWNTDG WEKQRSKVLP LPQGRPNSAP SDTRVQFHQD QAHFLVVHET QLAIYETTKL
1001: ECMKQWAVRE SLAPITHATF SCDSQLVYAS FMDATVCVFS SANLRLRCRV NPSAYLPASL SNSNVHPLVI AAHPQEPNMF AVGLSDGGVH IFEPLESEGK
1101: WGVAPPAENG SASGAPTAPS VGASASDQPQ R

Arabidopsis Description

TPLProtein TOPLESS [Source:UniProtKB/Swiss-Prot;Acc:Q94AI7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.