Factsheet for GSMUA_Achr6P22950_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P09920_001	Banana	cytosol	83.76	90.17
GSMUA_Achr6P36440_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	83.52	89.6
Os03t0254700-01	Rice	cytosol	77.38	84.55
EER92538	Sorghum	cytosol	76.66	84.36
TraesCS4D01G221200.1	Wheat	cytosol	76.74	83.77
TraesCS4B01G220900.3	Wheat	cytosol	76.82	83.71
TraesCS4A01G083300.2	Wheat	cytosol	76.74	83.7
Zm00001d028481_P017	Maize	cytosol	76.25	83.47
HORVU0Hr1G008690.1	Barley	cytosol, endoplasmic reticulum	76.58	83.45
Zm00001d047897_P013	Maize	cytosol	76.09	83.29
KRH23604	Soybean	endoplasmic reticulum	74.64	81.63
KRH47407	Soybean	cytosol	74.39	81.5
KRH44501	Soybean	cytosol	74.56	81.47
VIT_09s0002g08370.t01	Wine grape	cytosol	74.72	81.28
KRH09700	Soybean	cytosol	73.18	80.18
AT1G15750.3	Thale cress	cytosol	72.7	79.58
CDY36584	Canola	cytosol	71.57	79.25
PGSC0003DMT400036646	Potato	cytosol, plastid	19.55	79.08
AT1G80490.2	Thale cress	cytosol	71.49	79.02
Bra026112.1-P	Field mustard	cytosol	71.49	79.02
CDY33387	Canola	cytosol	71.32	78.98
CDX81729	Canola	cytosol	71.24	78.96
Bra003569.1-P	Field mustard	cytosol	69.39	78.88
CDY53312	Canola	cytosol	69.71	78.74
Bra026751.1-P	Field mustard	cytosol	71.73	78.58
CDX67950	Canola	cytosol	71.16	78.38
CDX79383	Canola	cytosol	70.68	78.12
PGSC0003DMT400036648	Potato	plastid	55.09	77.77
GSMUA_Achr4P12340_001	Banana	cytosol	62.84	68.37
GSMUA_Achr4P05650_001	Banana	cytosol	62.44	68.23
GSMUA_Achr4P11600_001	Banana	cytosol	61.95	67.4
GSMUA_Achr1P10830_001	Banana	cytosol	60.9	66.02
GSMUA_Achr1P15450_001	Banana	cytosol	42.81	64.48
GSMUA_Achr4P04560_001	Banana	cytosol	60.5	64.13
PGSC0003DMT400036649	Potato	cytosol	25.04	63.66
VIT_04s0008g06380.t01	Wine grape	cytosol	8.8	60.56
GSMUA_Achr1P15460_001	Banana	endoplasmic reticulum, extracellular	19.39	60.45
GSMUA_Achr11P...	Banana	cytosol	55.25	60.26
GSMUA_Achr2P00320_001	Banana	cytosol	56.62	58.76
Solyc05g016070.1.1	Tomato	cytosol	5.9	55.73
VIT_04s0008g06400.t01	Wine grape	mitochondrion	9.13	55.66
VIT_04s0008g06330.t01	Wine grape	extracellular	49.6	54.0
GSMUA_AchrUn_...	Banana	cytosol	48.95	53.02
VIT_04s0008g06340.t01	Wine grape	cytosol	7.35	52.91
KRH52398	Soybean	cytosol	43.94	51.61
KRH61732	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	44.18	51.6
KRH05196	Soybean	cytosol	21.24	48.43
VIT_04s0008g06390.t01	Wine grape	extracellular	8.16	46.12
CDX79301	Canola	cytosol	5.57	31.8

Protein Annotations

MapMan:11.2.2.2	MapMan:15.5.53.1	Gene3D:2.130.10.10	InterPro:CTLH_C	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr6G22950_001	EnsemblPlants:GSMUA_Achr6P22950_001	EnsemblPlants:GSMUA_Achr6T22950_001	InterPro:IPR001680	InterPro:IPR006594
InterPro:IPR006595	InterPro:IPR015943	InterPro:IPR017986	InterPro:LisH	UniProt:M0T9E3	PFAM:PF00400
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PFscan:PS50896	PFscan:PS50897	PANTHER:PTHR44083
PANTHER:PTHR44083:SF4	SMART:SM00320	SMART:SM00667	SMART:SM00668	SUPFAM:SSF50978	InterPro:Topless_fam
UniParc:UPI0002962D2F	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
SEG:seg	:	:	:	:	:

Description

Protein TOPLESS [Source:GMGC_GENE;Acc:GSMUA_Achr6G22950_001]

Coordinates

chr6:-:22059807..22084999

Molecular Weight (calculated)

137193.0 Da

IEP (calculated)

7.521

GRAVY (calculated)

-0.267

Length

1238 amino acids

Sequence
(BLAST)

0001: MWCSKSPCFL LSLEVCNLLD DSLLSFQLHI KQFNLSDLST FAYKSTHPCR KLGQYSSSVS VPLSFSISAG FYLNYWSLVS LPPSDRSSSS SPPSSSWRVS
0101: RWRRRKTMSS LSRELVFLIL QFLDEEKFKE TVHKLEQDSG FYFNMKYFED EVHNGNWDNV ERYLSGFTKV DDNRYSMKIF FEIRKQKYLE ALDKHDRAKA
0201: VEILVKDLKV FASFNEELFK EITQLLTLEN FRENEQLSKY GDTKSARTIM LVELKKLIEA NPLFRDKLQL PNLKSSRLRT LINQSLNWQH QLCKNPRPNP
0301: DIKTLFVDHS CGQPNGALAP SPANSPLLGS MPKAGGFPPL GAHGPFQPAP APVPTPLAGW MSNPPAVAGG AIGLSAPTNP GIAILKHPRT PPTANPSIEY
0401: GDSDHVPKRT RPLGISDEVN LPVNILPVSY PQNHNQAMYT LEDLPKMVAR TLSQGSNPMS MDFHPIQQTI LLVGTNVGDI ALWDVGSRER LILTNFKVWE
0501: IGSCSMSLQA SLVKDPAVSV NRIIWSPDGS LFGVAYSRHI VQIFSYHGAD DIRQHLEIDA HTGGVNDVAF AHPNKQLSII TCGDDKTIKV WDATSGTKHY
0601: TFEGHESPVY SVCPHHKENI QFIFSTALDG KIKAWLYDNL GSRVDYDAPG HWCTTMAYSA DGSRLFSCGT SKEGETFIVE WNESEGAVKR TYQGFRKRSL
0701: GVVQFDTTRN RFLAAGDEFL IKFWDMDNTS LLTTIDADGG LPASPRIRFN KEGTLLAVST HDNGIKILAN SDGLRLLRTL ENHSFDTSRT VSETVTKPII
0801: SPLSAAAVAT TSGITDRTAL PPMAIAGMSG DCRNLVDVKP KIADESMDKS KIWILSELNE PTQCRSLRLV DNLRTSKISR LIYTNSGFAI LALASNAIHL
0901: LWKWPRNERN SSGKATASVA PQLWQPPSGI LMTNDITDTN PEEPVHCFAL SKNDSYVMSA SGGKISLFNM MTFKTMTTFM PPPPAATFLA FHPQDNNIIA
1001: IGMDDSTIQT YNVRVDEVKS KLRGHSKRIT GLAFSNVLNV LVSSGADAQL CVWGTDGWEK QRSRFLQIPS GYTPSTISDT RVQFHQDQKH FLVVHETQIA
1101: IFETTKLECM KQWAPRDGSA PISHATLSCD SQLIYVSFLD ATVCIFNAMN LRLRCRILPA AYLPPSVSTT VYPVVIAAHP SEPNQFALGL TDGGVHVLEP
1201: LESEGKWGVS PPAENGSASN MSTPPPAGAA SSSDQPQR

Best Arabidopsis Sequence Match ( AT1G15750.3 )
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEDEVHNGNW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDKHDR PKAVDILVKD
0101: LKVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPTLRNSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCGPPNGA RAPSPVNNPL LGGIPKAGGF PPLGAHGPFQ PTASPVPTPL AGWMSSPSSV PHPAVSAGAI ALGGPSIPAA LKHPRTPPTN ASLDYPSADS
0301: EHVSKRTRPM GISDEVNLGV NMLPMSFSGQ AHGHSPAFKA PDDLPKTVAR TLSQGSSPMS MDFHPIKQTL LLVGTNVGDI GLWEVGSRER LVQKTFKVWD
0401: LSKCSMPLQA ALVKEPVVSV NRVIWSPDGS LFGVAYSRHI VQLYSYHGGE DMRQHLEIDA HVGGVNDISF STPNKQLCVI TCGDDKTIKV WDAATGVKRH
0501: TFEGHEAPVY SVCPHYKENI QFIFSTALDG KIKAWLYDNM GSRVDYDAPG RWCTTMAYSA DGTRLFSCGT SKDGESFIVE WNESEGAVKR TYQGFHKRSL
0601: GVVQFDTTKN RYLAAGDDFS IKFWDMDAVQ LLTAIDGDGG LQASPRIRFN KEGSLLAVSG NENVIKIMAN SDGLRLLHTF ENISSESSKP AINSIAAAAA
0701: AAATSAGHAD RSANVVSIQG MNGDSRNMVD VKPVITEESN DKSKIWKLTE VSEPSQCRSL RLPENLRVAK ISRLIFTNSG NAILALASNA IHLLWKWQRN
0801: ERNATGKATA SLPPQQWQPA SGILMTNDVA ETNPEEAVPC FALSKNDSYV MSASGGKISL FNMMTFKTMA TFMPPPPAAT FLAFHPQDNN IIAIGMDDST
0901: IQIYNVRVDE VKSKLKGHSK RITGLAFSNV LNVLVSSGAD AQLCVWNTDG WEKQRSKVLP LPQGRPNSAP SDTRVQFHQD QAHFLVVHET QLAIYETTKL
1001: ECMKQWAVRE SLAPITHATF SCDSQLVYAS FMDATVCVFS SANLRLRCRV NPSAYLPASL SNSNVHPLVI AAHPQEPNMF AVGLSDGGVH IFEPLESEGK
1101: WGVAPPAENG SASGAPTAPS VGASASDQPQ R

Arabidopsis Description

TPLProtein TOPLESS [Source:UniProtKB/Swiss-Prot;Acc:Q94AI7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.