CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047897_P013	Maize	cytosol	97.78	97.26
Zm00001d028481_P017	Maize	cytosol	97.33	96.82
Os03t0254700-01	Rice	cytosol	93.24	92.59
HORVU0Hr1G008690.1	Barley	cytosol, endoplasmic reticulum	92.0	91.11
TraesCS4D01G221200.1	Wheat	cytosol	91.73	91.01
TraesCS4A01G083300.2	Wheat	cytosol	91.73	90.93
TraesCS4B01G220900.3	Wheat	cytosol	91.64	90.76
GSMUA_Achr4P09920_001	Banana	cytosol	84.8	82.96
GSMUA_Achr6P36440_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	83.82	81.72
KRH23604	Soybean	endoplasmic reticulum	80.89	80.39
KRH44501	Soybean	cytosol	80.62	80.05
VIT_09s0002g08370.t01	Wine grape	cytosol	80.89	79.96
KRH47407	Soybean	cytosol	80.27	79.91
KRH09700	Soybean	cytosol	79.11	78.76
Bra003569.1-P	Field mustard	cytosol	75.82	78.33
AT1G80490.2	Thale cress	cytosol	77.96	78.3
AT1G15750.3	Thale cress	cytosol	78.49	78.07
CDX81729	Canola	cytosol	77.51	78.07
CDY36584	Canola	cytosol	77.51	78.0
CDX67950	Canola	cytosol	77.87	77.94
CDY53312	Canola	cytosol	75.82	77.83
Bra026751.1-P	Field mustard	cytosol	78.13	77.79
Bra026112.1-P	Field mustard	cytosol	77.42	77.77
CDX79383	Canola	cytosol	77.33	77.68
CDY33387	Canola	cytosol	77.16	77.64
PGSC0003DMT400036646	Potato	cytosol, plastid	21.07	77.45
GSMUA_Achr6P22950_001	Banana	plasma membrane	84.36	76.66
PGSC0003DMT400036648	Potato	plastid	58.76	75.37
KXG24503	Sorghum	cytosol	69.33	68.54
PGSC0003DMT400036649	Potato	cytosol	26.76	61.81
KXG32191	Sorghum	cytosol	61.78	61.78
VIT_04s0008g06380.t01	Wine grape	cytosol	9.87	61.67
VIT_04s0008g06400.t01	Wine grape	mitochondrion	9.96	55.17
Solyc05g016070.1.1	Tomato	cytosol	6.4	54.96
VIT_04s0008g06340.t01	Wine grape	cytosol	8.36	54.65
VIT_04s0008g06330.t01	Wine grape	extracellular	54.31	53.74
KRH61732	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	47.56	50.47
KRH52398	Soybean	cytosol	47.2	50.38
KRH05196	Soybean	cytosol	22.84	47.33
VIT_04s0008g06390.t01	Wine grape	extracellular	9.16	47.03
CDX79301	Canola	cytosol	5.87	30.41
KXG21335	Sorghum	cytosol	21.42	26.6

Protein Annotations

MapMan:11.2.2.2	MapMan:15.5.53.1	Gene3D:2.130.10.10	EntrezGene:8054324	UniProt:C5WQV2	InterPro:CTLH_C
EnsemblPlants:EER92538	ProteinID:EER92538	ProteinID:EER92538.1	ProteinID:EER95161.2	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR001680	InterPro:IPR006594	InterPro:IPR006595	InterPro:IPR015943	InterPro:IPR017986
InterPro:LisH	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PFscan:PS50896
PFscan:PS50897	PANTHER:PTHR44083	PANTHER:PTHR44083:SF2	SMART:SM00320	SMART:SM00667	SMART:SM00668
EnsemblPlantsGene:SORBI_3001G433800	SUPFAM:SSF50978	unigene:Sbi.3297	unigene:Sbi.488	InterPro:Topless_fam	UniParc:UPI0001A826B6
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002465540.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:71221547..71230124

Molecular Weight (calculated)

124658.0 Da

IEP (calculated)

7.129

GRAVY (calculated)

-0.327

Length

1125 amino acids

Sequence
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFYFNMKY FEDEVINGNW DEVERYLGGF TKVDDNRYSM KIFFEIRKQK YLEALDKHDR SKAVEILVKD
0101: LKVFASFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPNLKNSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCGQPNGA RAPSPANNPL LGSMPKPGGF PPLGAHGPFQ PAPTPVPPLA GWMSNPPAVT HPAVSGGAIG FGTPTNPAAL LKHPRTPTTA NPGMDYPSGD
0301: SDHISKRTRP VGMSEEVNLP VNMLPVTYPQ SHNYQQDDFH KTVARTLTQG STPMSMDFHP LQQTLLLVGT NVGDIGLWDV GTKERLVVRN FKVWDLSKCT
0401: MTLQASLVKD PAVSVNRIIW SPDGTLFGVA YSRHIVQIYS YNGGDDLRQH LEIDAHIGGV NDIAFAHPNK QLCIITCGDD KTIKVWEATS GTKQFTFEGH
0501: EAPVYSVCPH YKENIQFIFS TALDGKIKAW LYDNLGSRVD YDAPGHWCTT MAYSADGSRL FSCGTSKDGE SHLVEWNESE GAVKRTYQGF RKRSMGVVQF
0601: DTTRNRFLAA GDEFMIKIWD MDSTGLLTTI DADGGLPASP RIRFNKEGTL LAVSTLDNGI KILANADGLR LLRTLENRSF DASRNATETV TKPLILTAAN
0701: AAAASSSVAA APSAITAMNG DSRSLVDVKP RIADESLDKS KVWKLMEITE STQCRSIKLA DNMRTSKISR LIYTNSGLAI LALTSSAVHL LWKWPRSDRN
0801: SGKATASVSP TLWQPPSGIF MTNDTTDNNP EEAVHCFALS KNDSYVMSAS GGKISLFNMM TFKTMTTFMP APPAATFLAF HPQDNNIIAI GMDDSTIQIY
0901: NVRIDEVKSK LRGHSKRITG LAFSNVLNVL VSSGADAQLC VWNTDGWEKQ KTRFLQIPSG RQSNILDTRV QFHQDQMHFL VVHETQIAIY ETTKLEPVKQ
1001: WPVRENSPPI THATFSCDSQ LIYASFMDAT VGIFNASSLR LQCRILPASY LPPNISPSVH PVVVAAHPSE ASQFALGLTD GGVFVLEPLE SERKWGNPPP
1101: VENGSASNLS TPPPNGASSS DQPER

Best Arabidopsis Sequence Match ( AT1G80490.3 )
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEDEVHNGNW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDRHDR PKAVDILVKD
0101: LKVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPTLRTSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCRLPNDA RAPSPVNNPL LGSLPKAEGF PPLGAHGPFQ PTPSPVPTPL AGWMSSPSSV PHPAVSGGPI ALGAPSIQAA LKHPRTPPSN SAVDYPSGDS
0301: DHVSKRTRPM GISDEVSLGV NMLPMTFPGQ AHGHNQTFKA PDDLPKTVAR TLSQGSSPMS MDFHPIKQTL LLVGTNVGDI GLWEVGSRER LVQKTFKVWD
0401: LSKCSMPLQA ALVKEPVVSV NRVIWSPDGS LFGVAYSRHI VQLYSYHGGE DMRQHLEIDA HVGGVNDIAF STPNKQLCVT TCGDDKTIKV WDAATGVKRY
0501: TFEGHEAPVY SICPHYKENI QFIFSTALDG KIKAWLYDNM GSRVDYEAPG RWCTTMAYSA DGTRLFSCGT SKDGESFIVE WNESEGAVKR TYQGFHKRSL
0601: GVVQFDTTKN RYLAAGDDFS IKFWDMDTIQ LLTAIDADGG LQASPRIRFN KEGSLLAVSA NDNMIKVMAN SDGLRLLHTV ENLSSESSKP AINSIPMVER
0701: PASVVSIPGM NGDSRNMVDV KPVITEESND KSKVWKLTEV GEPSQCRSLR LPENMRVTKI SRLIFTNSGN AILALASNAI HLLWKWQRND RNATGKATAS
0801: LPPQQWQPAS GILMTNDVAE TNPEEAVPCF ALSKNDSYVM SASGGKISLF NMMTFKTMAT FMPPPPAATF LAFHPQDNNI IAIGMDDSTI QIYNVRVDEV
0901: KSKLKGHSKR ITGLAFSNVL NVLVSSGADA QLCVWNTDGW EKQKSKVLQI PQGRSTSSLS DTRVQFHQDQ VHFLVVHETQ LAIYETTKLE CMKQWPVRES
1001: AAPITHATFS CDSQLIYTSF MDATICVFSS ANLRLRCRVN PSAYLPASLS NSNVHPLVIA AHPQESNMFA VGLSDGGVHI FEPLESEGKW GVAPPPENGS
1101: ASAVTATPSV GASASDQPQR

Arabidopsis Description

TPR1Topless-related protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WV90]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.