Factsheet for GSMUA_Achr6P36440_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, cytosol, plasma membrane, golgi

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, secretory
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P09920_001	Banana	cytosol	90.73	91.04
Os03t0254700-01	Rice	cytosol	82.84	84.38
EER92538	Sorghum	cytosol	81.72	83.82
TraesCS4B01G220900.3	Wheat	cytosol	82.24	83.54
TraesCS4A01G083300.2	Wheat	cytosol	82.15	83.52
GSMUA_Achr6P22950_001	Banana	plasma membrane	89.6	83.52
TraesCS4D01G221200.1	Wheat	cytosol	82.06	83.51
HORVU0Hr1G008690.1	Barley	cytosol, endoplasmic reticulum	81.8	83.1
Zm00001d047897_P013	Maize	cytosol	81.37	83.02
Zm00001d028481_P017	Maize	cytosol	81.02	82.67
KRH23604	Soybean	endoplasmic reticulum	79.98	81.54
KRH44501	Soybean	cytosol	79.9	81.38
KRH47407	Soybean	cytosol	79.55	81.24
VIT_09s0002g08370.t01	Wine grape	cytosol	79.98	81.11
KRH09700	Soybean	cytosol	78.51	80.18
AT1G15750.3	Thale cress	cytosol	77.82	79.4
CDY36584	Canola	cytosol	76.69	79.16
Bra026112.1-P	Field mustard	cytosol	76.6	78.93
CDY33387	Canola	cytosol	76.43	78.89
Bra003569.1-P	Field mustard	cytosol	74.44	78.88
CDX81729	Canola	cytosol	76.34	78.87
AT1G80490.2	Thale cress	cytosol	76.52	78.84
CDY53312	Canola	cytosol	74.87	78.83
CDX67950	Canola	cytosol	76.43	78.47
Bra026751.1-P	Field mustard	cytosol	76.78	78.41
CDX79383	Canola	cytosol	76.0	78.3
PGSC0003DMT400036648	Potato	plastid	58.75	77.31
PGSC0003DMT400036646	Potato	cytosol, plastid	19.84	74.84
GSMUA_Achr4P05650_001	Banana	cytosol	67.33	68.58
GSMUA_Achr4P12340_001	Banana	cytosol	67.16	68.1
GSMUA_Achr4P11600_001	Banana	cytosol	66.64	67.57
GSMUA_Achr1P10830_001	Banana	cytosol	65.08	65.76
GSMUA_Achr1P15450_001	Banana	cytosol	46.53	65.33
GSMUA_Achr4P04560_001	Banana	cytosol	64.73	63.96
PGSC0003DMT400036649	Potato	cytosol	26.69	63.24
VIT_04s0008g06380.t01	Wine grape	cytosol	9.53	61.11
GSMUA_Achr11P...	Banana	cytosol	59.1	60.09
GSMUA_Achr1P15460_001	Banana	endoplasmic reticulum, extracellular	20.1	58.44
GSMUA_Achr2P00320_001	Banana	cytosol	60.4	58.42
Solyc05g016070.1.1	Tomato	cytosol	6.41	56.49
VIT_04s0008g06400.t01	Wine grape	mitochondrion	9.62	54.68
VIT_04s0008g06330.t01	Wine grape	extracellular	53.55	54.35
GSMUA_AchrUn_...	Banana	cytosol	52.43	52.93
VIT_04s0008g06340.t01	Wine grape	cytosol	7.89	52.91
KRH52398	Soybean	cytosol	46.97	51.42
KRH61732	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	47.23	51.42
KRH05196	Soybean	cytosol	22.96	48.8
VIT_04s0008g06390.t01	Wine grape	extracellular	8.75	46.12
CDX79301	Canola	cytosol	5.72	30.41

Protein Annotations

MapMan:11.2.2.2	MapMan:15.5.53.1	Gene3D:2.130.10.10	InterPro:CTLH_C	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr6G36440_001	EnsemblPlants:GSMUA_Achr6P36440_001	EnsemblPlants:GSMUA_Achr6T36440_001	InterPro:IPR001680	InterPro:IPR006594
InterPro:IPR006595	InterPro:IPR015943	InterPro:IPR017986	InterPro:LisH	UniProt:M0TD86	PFAM:PF00400
PFscan:PS50082	PFscan:PS50294	PFscan:PS50896	PFscan:PS50897	PANTHER:PTHR44083	PANTHER:PTHR44083:SF4
SMART:SM00320	SMART:SM00667	SMART:SM00668	SUPFAM:SSF50978	InterPro:Topless_fam	UniParc:UPI000294A385
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

Protein TOPLESS [Source:GMGC_GENE;Acc:GSMUA_Achr6G36440_001]

Coordinates

chr6:-:34413619..34423114

Molecular Weight (calculated)

128059.0 Da

IEP (calculated)

7.774

GRAVY (calculated)

-0.294

Length

1154 amino acids

Sequence
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ EAGFYFNMKY FEDEVHNGNW DNVERYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDKHDR AKAVEILVKD
0101: LKVFASFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR TIMLVELKKL IEANPLFRDK LQFPNLKSSR LRTLINQSEF CLKYIINMRK LLLYILNWQH
0201: QLCKNPRPNP DIKTLFVDHS CGQPNGALAP SPANNPLLGS MPKAGGFPPL GTHAPFQPVP APVPTPLAGW MSNPSAVTHP VVSGAAIGLN APTNPGMAIL
0301: KHPRTPPTAN PSIEYSSADS DHVSKRTRPI GISDEVNLPV NILPVSYPQN HNQATYTIED LPKTVARTLS QGSNPMSMDF HPLQRTILLV GTNVGDIALW
0401: DVGTRERLIH KNFKVWELGT CSMSLQASLV KDPAVSVNRI IWNPDGSLFG VAYSRHIVQI YSYHGSDDIR QHLEIDAHVG GVNDIAFAHP SKQLSFITCG
0501: DDKTIKVWDA TSGTKQYTFE GHGAPVYSVC PHHKENIQFI FSTALDGKIK AWLYDNLGSR VDYDAPGHWC TTMAYSADGS RLFSCGTSKE GETFIVEWNE
0601: TEGAVKRTYQ GFRKRSLGVV QFDTTRNRFL AAGDEFLIKF WDMDNTNLLT TIDADGGLPA SPRIRFNKEG TLLAVSTHDN GIKILANADG IRLLRTLENR
0701: SFDASRTVSE TITKPMMSPL SAAAVATTSG ITDRTAPSMP ISGMNGDGRN LVDVKPRITD ESMDKSKIWK LTEINEPTQC RSLRLMDNLR TSKISRLIYT
0801: NSGAAILALA SNAIHLLWKW PRNERNSSGK ATASVAPQLW QPPSGILMTN EITDTNPDEV VHCFALSKND SYVVSASGGK ISLFNMMTFK TMTTFMPPPP
0901: TATFLAFHPL DNNIIAIGMD DSTIQIYNVR VDEVKRKLRG HSKRITGLAF SNALHVLVSS GADAQLCVWG TEGWEKQRSR FLQIQSARTP STISDTRVQF
1001: DQDQIHFLAV HETQIAIYET TKLECVKQWS PREGSAPISH ATFSCDSQSI YASFLDATVC IFNAANLKLR CRILPAAYLP ASVSTNVHPL VIAAHPSEPN
1101: QFALGLTDGG VHVVKPLESE GKWGVNPPAE NGSASSLSAP PTTAGPSSSD QPQR

Best Arabidopsis Sequence Match ( AT1G15750.3 )
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEDEVHNGNW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDKHDR PKAVDILVKD
0101: LKVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPTLRNSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCGPPNGA RAPSPVNNPL LGGIPKAGGF PPLGAHGPFQ PTASPVPTPL AGWMSSPSSV PHPAVSAGAI ALGGPSIPAA LKHPRTPPTN ASLDYPSADS
0301: EHVSKRTRPM GISDEVNLGV NMLPMSFSGQ AHGHSPAFKA PDDLPKTVAR TLSQGSSPMS MDFHPIKQTL LLVGTNVGDI GLWEVGSRER LVQKTFKVWD
0401: LSKCSMPLQA ALVKEPVVSV NRVIWSPDGS LFGVAYSRHI VQLYSYHGGE DMRQHLEIDA HVGGVNDISF STPNKQLCVI TCGDDKTIKV WDAATGVKRH
0501: TFEGHEAPVY SVCPHYKENI QFIFSTALDG KIKAWLYDNM GSRVDYDAPG RWCTTMAYSA DGTRLFSCGT SKDGESFIVE WNESEGAVKR TYQGFHKRSL
0601: GVVQFDTTKN RYLAAGDDFS IKFWDMDAVQ LLTAIDGDGG LQASPRIRFN KEGSLLAVSG NENVIKIMAN SDGLRLLHTF ENISSESSKP AINSIAAAAA
0701: AAATSAGHAD RSANVVSIQG MNGDSRNMVD VKPVITEESN DKSKIWKLTE VSEPSQCRSL RLPENLRVAK ISRLIFTNSG NAILALASNA IHLLWKWQRN
0801: ERNATGKATA SLPPQQWQPA SGILMTNDVA ETNPEEAVPC FALSKNDSYV MSASGGKISL FNMMTFKTMA TFMPPPPAAT FLAFHPQDNN IIAIGMDDST
0901: IQIYNVRVDE VKSKLKGHSK RITGLAFSNV LNVLVSSGAD AQLCVWNTDG WEKQRSKVLP LPQGRPNSAP SDTRVQFHQD QAHFLVVHET QLAIYETTKL
1001: ECMKQWAVRE SLAPITHATF SCDSQLVYAS FMDATVCVFS SANLRLRCRV NPSAYLPASL SNSNVHPLVI AAHPQEPNMF AVGLSDGGVH IFEPLESEGK
1101: WGVAPPAENG SASGAPTAPS VGASASDQPQ R

Arabidopsis Description

TPLProtein TOPLESS [Source:UniProtKB/Swiss-Prot;Acc:Q94AI7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.