Factsheet for GSMUA_Achr2P00320_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH33863	Soybean	cytosol	19.78	85.82
GSMUA_Achr11P...	Banana	cytosol	80.64	84.76
Os01t0254100-01	Rice	nucleus	75.86	80.16
KXG32191	Sorghum	cytosol	75.27	79.82
Zm00001d040279_P012	Maize	cytosol	75.27	79.82
HORVU3Hr1G035170.2	Barley	cytosol	74.18	78.32
TraesCS3B01G204200.3	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	74.43	78.17
TraesCS3D01G179800.3	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	74.43	78.17
TraesCS3A01G173300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	74.27	77.99
KRG92932	Soybean	nucleus	72.0	76.02
Solyc01g100050.2.1	Tomato	nucleus	70.75	74.56
KRG96753	Soybean	endoplasmic reticulum	70.58	74.51
PGSC0003DMT400063603	Potato	cytosol	70.41	74.2
KRH68470	Soybean	nucleus	70.16	74.07
KRH33861	Soybean	cytosol	51.89	73.52
CDY67912	Canola	cytosol	36.46	73.23
AT3G16830.1	Thale cress	cytosol	67.98	71.71
Bra020567.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	63.12	70.64
CDX80607	Canola	cytosol	66.14	70.64
CDX95900	Canola	cytosol	67.14	70.51
Bra022181.1-P	Field mustard	cytosol	66.89	70.49
CDX92100	Canola	cytosol	66.81	70.41
CDY25010	Canola	cytosol	65.55	70.32
CDY05552	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	65.3	70.12
CDX88252	Canola	cytosol	64.46	69.34
Bra009930.1-P	Field mustard	cytosol	62.62	69.23
AT5G27030.2	Thale cress	cytosol, endoplasmic reticulum	65.3	68.69
CDY50500	Canola	cytosol	28.33	66.93
Bra021203.1-P	Field mustard	cytosol	67.14	63.82
CDY50502	Canola	cytosol, plastid	67.14	62.97
GSMUA_Achr4P05650_001	Banana	cytosol	59.6	62.75
GSMUA_Achr4P11600_001	Banana	cytosol	59.35	62.21
GSMUA_Achr4P12340_001	Banana	cytosol	59.18	62.04
GSMUA_Achr1P10830_001	Banana	cytosol	59.35	62.0
GSMUA_Achr4P09920_001	Banana	cytosol	59.43	61.65
GSMUA_Achr6P36440_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	58.42	60.4
GSMUA_Achr1P15460_001	Banana	endoplasmic reticulum, extracellular	19.78	59.45
GSMUA_Achr4P04560_001	Banana	cytosol	58.17	59.42
GSMUA_Achr1P15450_001	Banana	cytosol	40.07	58.15
GSMUA_Achr6P22950_001	Banana	plasma membrane	58.76	56.62
KRH30800	Soybean	mitochondrion	14.59	53.37
Zm00001d008338_P001	Maize	cytosol	59.77	51.26
GSMUA_AchrUn_...	Banana	cytosol	47.11	49.17
VIT_04s0008g06360.t01	Wine grape	cytosol	3.1	48.05
VIT_04s0008g06370.t01	Wine grape	cytosol	9.22	30.9

Protein Annotations

MapMan:11.2.2.2	MapMan:15.5.53.1	Gene3D:2.130.10.10	InterPro:CTLH_C	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr2G00320_001	EnsemblPlants:GSMUA_Achr2P00320_001	EnsemblPlants:GSMUA_Achr2T00320_001	InterPro:IPR001680	InterPro:IPR006594
InterPro:IPR006595	InterPro:IPR015943	InterPro:IPR017986	InterPro:LisH	UniProt:M0S3X3	PFAM:PF00400
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PFscan:PS50896	PFscan:PS50897	PANTHER:PTHR44083
PANTHER:PTHR44083:SF3	InterPro:Quinoprotein_ADH-like_supfam	SMART:SM00320	SMART:SM00667	SMART:SM00668	SUPFAM:SSF50978
SUPFAM:SSF50998	InterPro:Topless_fam	UniParc:UPI000294EC21	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

Topless-related protein 2 [Source:GMGC_GENE;Acc:GSMUA_Achr2G00320_001]

Coordinates

chr2:+:2294102..2305162

Molecular Weight (calculated)

132430.0 Da

IEP (calculated)

7.413

GRAVY (calculated)

-0.211

Length

1193 amino acids

Sequence
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKESFHKLEQ ESGFFFNMKY FEEKAQAGEW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDRHDR ATAVEILIKD
0101: LKVFSTFNEE LYKEITQLLT LENFRWCISI MRSLQVKRQS VRRLIVCIVK NVENEQLSKY GDTKSARSIM LIELKKLIEA NPLFREKLVF PTLKASRLRT
0201: LINQSLNWQH QLCKNPRPNP DIRTLFTDHT CAPPNGARAS PVPVPLAAAP KAAGTYTPLG AHGPFPPQAA SNASALAGWM ANAAASSSVQ SAVVTASSIP
0301: NTSTELSIQF SCDFLDSLCS VEIVFTIMSL FVHPFVNIIY ISIMKRPRTP PNTISMSDYQ NVESEQLMKR LRPGSHPVTY PAALPQVTWS LDDLPRVVAC
0401: SLTQGSNVTS MDFHPSHHTV LLVGSVNGEI TLWEIGLREK LVSKQFRVWE MAACSPQFQS AIVKDSSISI TRVIWSPDGN LIGIAFTKHL IHLHGYQAPN
0501: DLCQVIEIDA HVGGVNDIAF SHPSKQLCVV TCGDDKLIKV WDLNGQRLFV FEGHEAPVYS ICPHRKENIQ FIFSTSLDGK IKAWLYDNIG SRVDYDAPGR
0601: WSTTMLYSAD GSRLFSCGTS KDGDCFLVEW NESEGSIKRQ YTGFRKKSTV VVQFDTAQNH FLAAGEDNLI KFWDVDNINM LTSTEADGGL PSRPRLRFNK
0701: EGNLLAVTTV DNGFKILANA DGLRILRSFG SRSLEPFRAQ HEPSPIKVSC SPVVANISPN ISIVDRLDRN SPAKPSIILS GGDPTPRNVD NKPKISEELQ
0801: DKMKSWELAE ILNAKQCRVA SMPDTDSACK VARLLYTNSG VGLLALGSNA IQRLWKWSRN EQNPSGKATA SVVPQHWQPN SGLLMTNDAS DTNSEEAVPC
0901: IALSKNDSYV MSACGGKISL FNMMTFKVMT TFMSPPPAST FLAFHPQDNN IIAIGMEDST IHIYNVRVDE VKTKLKGHQK RISGLAFSNN LGILVSSGAD
1001: AQLCIWNTET WEKKKSLAIQ LPTGKTPASD TRVQFNSDQS RLFVVHETQL AIYDASNTER IQQWVPQDAL SAPISYASYS CNSQLVYASF CDGNIGVFDA
1101: DNLRLRCRIA PSAYMTPAAA SSNLPVYPLV IAVHPQEPNQ FAVGLADGAV KVFEPLESEG KWGAPVPVDN GVHGSRAQAS STTSNSAVDQ LQR

Best Arabidopsis Sequence Match ( AT3G16830.1 )
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKESVHKLEQ ESGFFFNIKY FEEKALAGEW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDRNDR AKAVEILAKD
0101: LKVFATFNEE LYKEITQLLT LENFRENEQL SKYGDTKSAR SIMYTELKKL IEANPLFREK LAFPSFKASR LRTLINQSLN WQHQLCKNPR PNPDIKTLFL
0201: DHSCSPSNGA RALTPVNLPV AAVARPSNFV PLGVHGGPFQ SNPAPAPNAN ALAGWMANPN PSSSVPSGVV AASPFPMQPS QVNELKHPRA PSNSLGLMDY
0301: QSADHEQLMK RLRSAQTSNE VTYPAHSHPP ASLDDLPRNV VSTIRQGSVV ISMDFHPSHH TLLAVGCSSG EVTLWEVGSR EKVVTEPFKI WNMAACSVIF
0401: QGSIVKEPSI SVTRVAWSPD GNLLGVSFTK HLIHVYAYQG SDLRQHLEID AHVGCVNDLA FAHPNKQMCV VTCGDDKLIK VWDLSGKKLF TFEGHEAPVY
0501: SICPHQKENI QFIFSTALDG KIKAWLYDNV GSRVDYDAPG QWCTTMLYSA DGSRLFSCGT SKEGDSFLVE WNESEGALKR TYLGFRKKSA GVVQFDTTRN
0601: RFLAVGEDNQ IKFWNMDNTN LLTVVEAEGG LPNLPRLRFN KDGNLLAVTT ADNGFKILAN TDGLRTLRAF EARSFEASKA SIDMKVSTSA MASSISPAIG
0701: KIEHMDAGSP ARPTPIPNGI EAMSRTMEKP RNLDSVDKSK PLELTEIVDP TQCRQVTMPD SKDSVSKVAR LLYTNSGVGV LALGSNGVQR LWKWIRNEQN
0801: PTGKATASVT PQHWQPNSGL LMANDVPENP EGSVPCIALS KNDSYVMSAC GGKVSLFNMM TFKVMTTFMP PPPASTFLAF HPQDNNIIAI GMEDSSIHIY
0901: NVRVDEVKTK LKGHQKHITG LAFSTALNIL VSSGADAQLF FWTADSWEKK KSSAIQLPPG KAPVGDTRVQ FHNDQIQLLV SHETQLAIYD ASKMECIHKW
1001: VPQEALSSPI TSASYSCNSQ LVYASFADGN IAVFDAESLR LRCRIAPSAY MPQPTPNSAP IFPQVITAHP QEPNQLAVGL SDGSVKVIEP SELSRRWGVG
1101: VAAGSDKAGT ENGRPSSSSA ANNSSSDQIQ R

Arabidopsis Description

TPR2Topless-related protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRZ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.