Factsheet for VIT_04s0008g06370.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0008g06380.t01	Wine grape	cytosol	6.74	13.33
VIT_04s0008g06350.t01	Wine grape	cytosol	4.78	12.69
VIT_09s0002g08370.t01	Wine grape	cytosol	37.64	11.78
VIT_04s0008g06340.t01	Wine grape	cytosol	5.34	11.05
VIT_09s0002g07020.t01	Wine grape	cytosol	34.83	10.9
VIT_16s0039g02410.t01	Wine grape	cytosol	34.27	10.75
VIT_11s0016g05620.t01	Wine grape	cytosol	33.43	10.51
TraesCS3D01G179800.3	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	32.87	10.3
TraesCS3B01G204200.3	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	32.87	10.3
TraesCS3A01G173300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	32.87	10.3
Os01t0254100-01	Rice	nucleus	32.02	10.1
VIT_14s0060g01680.t01	Wine grape	cytosol	32.02	10.07
HORVU3Hr1G035170.2	Barley	cytosol	31.74	10.0
Zm00001d040279_P012	Maize	cytosol	31.18	9.87
KXG32191	Sorghum	cytosol	30.9	9.78
GSMUA_Achr11P...	Banana	cytosol	30.62	9.6
VIT_04s0008g06330.t01	Wine grape	extracellular	30.34	9.5
GSMUA_Achr2P00320_001	Banana	cytosol	30.9	9.22
Zm00001d008338_P001	Maize	cytosol	28.09	7.19
VIT_04s0008g06360.t01	Wine grape	cytosol	0.28	1.3
VIT_04s0008g06400.t01	Wine grape	mitochondrion	0.28	0.49
VIT_04s0008g06390.t01	Wine grape	extracellular	0.28	0.46

Protein Annotations

ArrayExpress:VIT_04s0008g06370	EMBL:FN595231	EnsemblPlants:VIT_04s0008g06370.t01	EnsemblPlantsGene:VIT_04s0008g06370	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Topless_fam	PANTHER:PTHR44083
PANTHER:PTHR44083:SF2	ProteinID:CCB46857	ProteinID:CCB46857.1	UniParc:UPI00021097FD	UniProt:F6H3W8	MapMan:35.1

Description

No Description!

Coordinates

chr4:+:6258507..6261202

Molecular Weight (calculated)

40309.3 Da

IEP (calculated)

8.490

GRAVY (calculated)

-0.224

Length

356 amino acids

Sequence
(BLAST)

001: MTQLLTLDNI REHDQLRGYR DANHARSAVL NEIYRLIEAN SLFNDRLNFP DLEASRLKTI MNQCLNWQHF HCQNPADIPD LRSSFMDHKC NKPDSSQQPA
101: TNNQLIGSTT RSKGLFQLGS NGVCFSICTL INSTPSASST TYANFMIRTS STFQLRMRNL SIIHHATNQG SQGIFTDGPG CCNDMSRSMP SGFSAKVTWI
201: HYCKFCHLSF NKSLAEHGFS TLQHSLLLVG TDIREIALWE VSSKQKVASR AFGLWDMRGT SMKLKVTLTK EPRVSYSKHM VWLYSFVGGN GIRQPLEEWD
301: VAFGVKQFTF EGYEVPYIQC TLNASILLLS LAPNFSFLKI DPLMVLCLNL SFQHHN

Best Arabidopsis Sequence Match ( AT1G15750.1 )
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEDEVHNGNW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDKHDR PKAVDILVKD
0101: LKVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPTLRNSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCGPPNGA RAPSPVNNPL LGGIPKAGGF PPLGAHGPFQ PTASPVPTPL AGWMSSPSSV PHPAVSAGAI ALGGPSIPAA LKHPRTPPTN ASLDYPSADS
0301: EHVSKRTRPM GISDEVNLGV NMLPMSFSGQ AHGHSPAFKA PDDLPKTVAR TLSQGSSPMS MDFHPIKQTL LLVGTNVGDI GLWEVGSRER LVQKTFKVWD
0401: LSKCSMPLQA ALVKEPVVSV NRVIWSPDGS LFGVAYSRHI VQLYSYHGGE DMRQHLEIDA HVGGVNDISF STPNKQLCVI TCGDDKTIKV WDAATGVKRH
0501: TFEGHEAPVY SVCPHYKENI QFIFSTALDG KIKAWLYDNM GSRVDYDAPG RWCTTMAYSA DGTRLFSCGT SKDGESFIVE WNESEGAVKR TYQGFHKRSL
0601: GVVQFDTTKN RYLAAGDDFS IKFWDMDAVQ LLTAIDGDGG LQASPRIRFN KEGSLLAVSG NENVIKIMAN SDGLRLLHTF ENISSESSKP AINSIAAAAA
0701: AAATSAGHAD RSANVVSIQG MNGDSRNMVD VKPVITEESN DKSKIWKLTE VSEPSQCRSL RLPENLRVAK ISRLIFTNSG NAILALASNA IHLLWKWQRN
0801: ERNATGKATA SLPPQQWQPA SGILMTNDVA ETNPEEAVPC FALSKNDSYV MSASGGKISL FNMMTFKTMA TFMPPPPAAT FLAFHPQDNN IIAIGMDDST
0901: IQIYNVRVDE VKSKLKGHSK RITGLAFSNV LNVLVSSGAD AQLCVWNTDG WEKQRSKVLP LPQGRPNSAP SDTRVQFHQD QAHFLVVHET QLAIYETTKL
1001: ECMKQWAVRE SLAPITHATF SCDSQLVYAS FMDATVCVFS SANLRLRCRV NPSAYLPASL SNSNVHPLVI AAHPQEPNMF AVGLSDGGVH IFEPLESEGK
1101: WGVAPPAENG SASGAPTAPS VGASASDQPQ R

Arabidopsis Description

TPLProtein TOPLESS [Source:UniProtKB/Swiss-Prot;Acc:Q94AI7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.