Factsheet for VIT_04s0008g06380.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0008g06340.t01	Wine grape	cytosol	41.67	43.6
VIT_04s0008g06350.t01	Wine grape	cytosol	30.0	40.3
VIT_04s0008g06360.t01	Wine grape	cytosol	16.11	37.66
EER92538	Sorghum	cytosol	61.67	9.87
VIT_09s0002g08370.t01	Wine grape	cytosol	62.22	9.84
Os03t0254700-01	Rice	cytosol	61.67	9.8
TraesCS4D01G221200.1	Wheat	cytosol	61.67	9.79
TraesCS4A01G083300.2	Wheat	cytosol	61.67	9.78
HORVU0Hr1G008690.1	Barley	cytosol, endoplasmic reticulum	61.67	9.77
TraesCS4B01G220900.3	Wheat	cytosol	61.67	9.77
GSMUA_Achr4P09920_001	Banana	cytosol	61.67	9.65
GSMUA_Achr6P36440_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	61.11	9.53
VIT_16s0039g02410.t01	Wine grape	cytosol	59.44	9.43
VIT_11s0016g05620.t01	Wine grape	cytosol	58.89	9.36
VIT_09s0002g07020.t01	Wine grape	cytosol	58.89	9.31
VIT_14s0060g01680.t01	Wine grape	cytosol	57.78	9.19
VIT_04s0008g06330.t01	Wine grape	extracellular	56.11	8.88
GSMUA_Achr6P22950_001	Banana	plasma membrane	60.56	8.8
VIT_04s0008g06370.t01	Wine grape	cytosol	13.33	6.74
Zm00001d045829_P001	Maize	mitochondrion	7.78	4.29
Zm00001d027915_P001	Maize	cytosol	3.89	2.26
Zm00001d050983_P001	Maize	cytosol	2.78	2.0
Zm00001d004623_P001	Maize	cytosol, plastid	2.78	1.85
VIT_04s0008g06390.t01	Wine grape	extracellular	2.22	1.83
Zm00001d052868_P001	Maize	cytosol, peroxisome, plasma membrane	2.22	1.69
VIT_04s0008g06400.t01	Wine grape	mitochondrion	0.0	0.0

Protein Annotations

MapMan:35.1	ProteinID:CCB46858	ProteinID:CCB46858.1	InterPro:CTLH_C	ncoils:Coil	UniProt:F6H3W9
EMBL:FN595231	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR006594	InterPro:IPR006595
InterPro:LisH	PFscan:PS50896	PFscan:PS50897	PANTHER:PTHR44083	SMART:SM00667	SMART:SM00668
InterPro:Topless_fam	UniParc:UPI00021097FE	ArrayExpress:VIT_04s0008g06380	EnsemblPlantsGene:VIT_04s0008g06380	EnsemblPlants:VIT_04s0008g06380.t01	:

Description

No Description!

Coordinates

chr4:+:6276842..6277645

Molecular Weight (calculated)

21525.5 Da

IEP (calculated)

9.647

GRAVY (calculated)

-0.415

Length

180 amino acids

Sequence
(BLAST)

001: MALKLQKKEL IFLILQFLHE KKYTDTVHKL ERESAVFFNM PYFEEMMHMG QFDEAQHYLL AFTNLKANNY SRKIFFEIRK QKYLEALDKH DDVKALEILK
101: KDLKVFASDN ESLFKEMTQL LALNDFREMA PLSTYKDAET ARKLLTVELK KLLRANPLIR EKLSFPDFEP SRLLELLKKR

Best Arabidopsis Sequence Match ( AT1G15750.1 )
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEDEVHNGNW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDKHDR PKAVDILVKD
0101: LKVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPTLRNSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCGPPNGA RAPSPVNNPL LGGIPKAGGF PPLGAHGPFQ PTASPVPTPL AGWMSSPSSV PHPAVSAGAI ALGGPSIPAA LKHPRTPPTN ASLDYPSADS
0301: EHVSKRTRPM GISDEVNLGV NMLPMSFSGQ AHGHSPAFKA PDDLPKTVAR TLSQGSSPMS MDFHPIKQTL LLVGTNVGDI GLWEVGSRER LVQKTFKVWD
0401: LSKCSMPLQA ALVKEPVVSV NRVIWSPDGS LFGVAYSRHI VQLYSYHGGE DMRQHLEIDA HVGGVNDISF STPNKQLCVI TCGDDKTIKV WDAATGVKRH
0501: TFEGHEAPVY SVCPHYKENI QFIFSTALDG KIKAWLYDNM GSRVDYDAPG RWCTTMAYSA DGTRLFSCGT SKDGESFIVE WNESEGAVKR TYQGFHKRSL
0601: GVVQFDTTKN RYLAAGDDFS IKFWDMDAVQ LLTAIDGDGG LQASPRIRFN KEGSLLAVSG NENVIKIMAN SDGLRLLHTF ENISSESSKP AINSIAAAAA
0701: AAATSAGHAD RSANVVSIQG MNGDSRNMVD VKPVITEESN DKSKIWKLTE VSEPSQCRSL RLPENLRVAK ISRLIFTNSG NAILALASNA IHLLWKWQRN
0801: ERNATGKATA SLPPQQWQPA SGILMTNDVA ETNPEEAVPC FALSKNDSYV MSASGGKISL FNMMTFKTMA TFMPPPPAAT FLAFHPQDNN IIAIGMDDST
0901: IQIYNVRVDE VKSKLKGHSK RITGLAFSNV LNVLVSSGAD AQLCVWNTDG WEKQRSKVLP LPQGRPNSAP SDTRVQFHQD QAHFLVVHET QLAIYETTKL
1001: ECMKQWAVRE SLAPITHATF SCDSQLVYAS FMDATVCVFS SANLRLRCRV NPSAYLPASL SNSNVHPLVI AAHPQEPNMF AVGLSDGGVH IFEPLESEGK
1101: WGVAPPAENG SASGAPTAPS VGASASDQPQ R

Arabidopsis Description

TPLProtein TOPLESS [Source:UniProtKB/Swiss-Prot;Acc:Q94AI7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.