Factsheet for Zm00001d004623_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050983_P001	Maize	cytosol	79.26	85.6
Zm00001d027915_P001	Maize	cytosol	80.0	69.68
Zm00001d045829_P001	Maize	mitochondrion	49.26	40.8
Zm00001d052868_P001	Maize	cytosol, peroxisome, plasma membrane	23.7	27.12
Zm00001d047897_P013	Maize	cytosol	56.3	13.44
Zm00001d028481_P017	Maize	cytosol	54.07	12.91
Bra003569.1-P	Field mustard	cytosol	46.67	11.57
CDX79383	Canola	cytosol	46.67	11.25
AT1G15750.3	Thale cress	cytosol	47.04	11.23
CDX67950	Canola	cytosol	46.67	11.21
AT1G80490.2	Thale cress	cytosol	46.3	11.16
VIT_09s0002g08370.t01	Wine grape	cytosol	47.04	11.16
Bra026751.1-P	Field mustard	cytosol	46.67	11.15
Solyc03g117360.2.1	Tomato	nucleus	46.3	11.06
KRH47407	Soybean	cytosol	46.3	11.06
KRH44501	Soybean	cytosol	45.93	10.94
CDY36584	Canola	cytosol	44.81	10.82
Bra026112.1-P	Field mustard	cytosol	44.81	10.8
KRH23604	Soybean	endoplasmic reticulum	45.19	10.78
CDX81729	Canola	cytosol	44.44	10.74
CDY33387	Canola	cytosol	44.44	10.73
KRH09700	Soybean	cytosol	44.07	10.53
CDY53312	Canola	cytosol	38.52	9.49
Zm00001d024523_P003	Maize	cytosol	37.41	8.76
VIT_04s0008g06330.t01	Wine grape	extracellular	34.81	8.27
KRH61732	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	29.63	7.55
KRH52398	Soybean	cytosol	28.52	7.31
PGSC0003DMT400028457	Potato	cytosol	31.85	7.29
Zm00001d040279_P012	Maize	cytosol	30.0	7.2
Solyc08g029050.2.1	Tomato	cytosol	31.11	6.88
Zm00001d008338_P001	Maize	cytosol	22.59	4.39
VIT_04s0008g06380.t01	Wine grape	cytosol	1.85	2.78
CDX79301	Canola	cytosol	1.85	2.3
VIT_04s0008g06340.t01	Wine grape	cytosol	1.11	1.74
VIT_04s0008g06390.t01	Wine grape	extracellular	1.11	1.37
KRH05196	Soybean	cytosol	2.59	1.29
VIT_04s0008g06400.t01	Wine grape	mitochondrion	0.37	0.49
Solyc03g117380.2.1	Tomato	cytosol	0.0	0.0

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A1D6EGK5	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR015943	ProteinID:ONM19299.1	PANTHER:PTHR44083	PANTHER:PTHR44083:SF2	SUPFAM:SSF50978	InterPro:Topless_fam
UniParc:UPI0008457E2A	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat_dom_sf	EnsemblPlantsGene:Zm00001d004623	EnsemblPlants:Zm00001d004623_P001	EnsemblPlants:Zm00001d004623_T001

Description

Topless-related protein 2

Coordinates

chr2:+:122489904..122491422

Molecular Weight (calculated)

29956.7 Da

IEP (calculated)

7.043

GRAVY (calculated)

-0.250

Length

270 amino acids

Sequence
(BLAST)

001: MPQPAAFVSV RPSDGQPTPS NVSNKKMKHS GEALILDGVG EVAVTIGRNS QQPLSTTPPP VQMDLRCIPL SKGKENLEIF QPVDHTKLGS RSQCPLPRHV
101: NLPVNMLPVT YPQSHNYQQD DFHKTVARTL SQGSTPMSMD FHPLQQTLLL VGTNVGDIGL WDVGTKDRLV ASLVKDPAVS VNRIIWSLDG TLFGVAYSRH
201: IVQIYSYNGG DDIRQHLEID AHIGGVNDIA FGFYLAWATQ HFHSLCFLNF FLHRHPKEVI EANGYHEFTS

Best Arabidopsis Sequence Match ( AT1G15750.1 )
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEDEVHNGNW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDKHDR PKAVDILVKD
0101: LKVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPTLRNSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCGPPNGA RAPSPVNNPL LGGIPKAGGF PPLGAHGPFQ PTASPVPTPL AGWMSSPSSV PHPAVSAGAI ALGGPSIPAA LKHPRTPPTN ASLDYPSADS
0301: EHVSKRTRPM GISDEVNLGV NMLPMSFSGQ AHGHSPAFKA PDDLPKTVAR TLSQGSSPMS MDFHPIKQTL LLVGTNVGDI GLWEVGSRER LVQKTFKVWD
0401: LSKCSMPLQA ALVKEPVVSV NRVIWSPDGS LFGVAYSRHI VQLYSYHGGE DMRQHLEIDA HVGGVNDISF STPNKQLCVI TCGDDKTIKV WDAATGVKRH
0501: TFEGHEAPVY SVCPHYKENI QFIFSTALDG KIKAWLYDNM GSRVDYDAPG RWCTTMAYSA DGTRLFSCGT SKDGESFIVE WNESEGAVKR TYQGFHKRSL
0601: GVVQFDTTKN RYLAAGDDFS IKFWDMDAVQ LLTAIDGDGG LQASPRIRFN KEGSLLAVSG NENVIKIMAN SDGLRLLHTF ENISSESSKP AINSIAAAAA
0701: AAATSAGHAD RSANVVSIQG MNGDSRNMVD VKPVITEESN DKSKIWKLTE VSEPSQCRSL RLPENLRVAK ISRLIFTNSG NAILALASNA IHLLWKWQRN
0801: ERNATGKATA SLPPQQWQPA SGILMTNDVA ETNPEEAVPC FALSKNDSYV MSASGGKISL FNMMTFKTMA TFMPPPPAAT FLAFHPQDNN IIAIGMDDST
0901: IQIYNVRVDE VKSKLKGHSK RITGLAFSNV LNVLVSSGAD AQLCVWNTDG WEKQRSKVLP LPQGRPNSAP SDTRVQFHQD QAHFLVVHET QLAIYETTKL
1001: ECMKQWAVRE SLAPITHATF SCDSQLVYAS FMDATVCVFS SANLRLRCRV NPSAYLPASL SNSNVHPLVI AAHPQEPNMF AVGLSDGGVH IFEPLESEGK
1101: WGVAPPAENG SASGAPTAPS VGASASDQPQ R

Arabidopsis Description

TPLProtein TOPLESS [Source:UniProtKB/Swiss-Prot;Acc:Q94AI7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.