Factsheet for Zm00001d052868_P001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

plastid 1
plasma membrane 1
mitochondrion 1
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	mitochondrion, peroxisome, plasma membrane, plastid
iPSORT:	plastid
MultiLoc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045829_P001	Maize	mitochondrion	61.86	44.79
Zm00001d050983_P001	Maize	cytosol	34.32	32.4
Zm00001d027915_P001	Maize	cytosol	37.29	28.39
Zm00001d004623_P001	Maize	cytosol, plastid	27.12	23.7
Zm00001d047897_P013	Maize	cytosol	42.37	8.84
Zm00001d028481_P017	Maize	cytosol	41.1	8.58
AT1G80490.2	Thale cress	cytosol	36.44	7.68
AT1G15750.3	Thale cress	cytosol	36.44	7.6
CDX79383	Canola	cytosol	36.02	7.59
CDX67950	Canola	cytosol	36.02	7.56
Bra003569.1-P	Field mustard	cytosol	34.75	7.53
CDY33387	Canola	cytosol	35.59	7.51
CDY36584	Canola	cytosol	35.59	7.51
Bra026112.1-P	Field mustard	cytosol	35.59	7.5
Bra026751.1-P	Field mustard	cytosol	35.17	7.35
KRH47407	Soybean	cytosol	35.17	7.35
Solyc03g117360.2.1	Tomato	nucleus	35.17	7.35
CDX81729	Canola	cytosol	34.75	7.34
KRH09700	Soybean	cytosol	34.75	7.26
KRH44501	Soybean	cytosol	34.32	7.15
VIT_09s0002g08370.t01	Wine grape	cytosol	34.32	7.12
KRH23604	Soybean	endoplasmic reticulum	33.9	7.07
Zm00001d024523_P003	Maize	cytosol	30.93	6.33
CDY53312	Canola	cytosol	27.97	6.02
VIT_04s0008g06330.t01	Wine grape	extracellular	28.81	5.98
Zm00001d040279_P012	Maize	cytosol	25.85	5.42
PGSC0003DMT400028457	Potato	cytosol	23.31	4.66
KRH61732	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	20.76	4.62
Solyc08g029050.2.1	Tomato	cytosol	23.73	4.59
VIT_04s0008g06400.t01	Wine grape	mitochondrion	3.81	4.43
KRH52398	Soybean	cytosol	19.49	4.36
VIT_04s0008g06390.t01	Wine grape	extracellular	3.81	4.11
Zm00001d008338_P001	Maize	cytosol	13.98	2.37
VIT_04s0008g06380.t01	Wine grape	cytosol	1.69	2.22
KRH05196	Soybean	cytosol	4.66	2.03
VIT_04s0008g06340.t01	Wine grape	cytosol	0.85	1.16
CDX79301	Canola	cytosol	0.42	0.46
Solyc03g117380.2.1	Tomato	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Zm00001d052868_P001	EnsemblPlants:Zm00001d052868_T001	EnsemblPlantsGene:Zm00001d052868	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Topless_fam	PANTHER:PTHR44083	PANTHER:PTHR44083:SF2
ProteinID:AQK58260.1	SEG:seg	UniParc:UPI0008456698	UniProt:A0A1D6QKL4	MapMan:35.1	:

Description

Topless-related protein 2

Coordinates

chr4:-:203023368..203025283

Molecular Weight (calculated)

27016.8 Da

IEP (calculated)

6.616

GRAVY (calculated)

-0.165

Length

236 amino acids

Sequence
(BLAST)

001: MLPVTYPQSQ NYQQDDFHKT VARTLSQGST PMSMDFHPLQ QTLLNVGTNV GDIGSWDVGT KDRLVVRNFK VWDLSKCTII LQVLLIQGIL YKFIPIMVAT
101: ILDNTWRPLA PCSHHYCKIL SVRPVAAPYS ATINFRLEGF NLLNTSSRVI CSFEGRCILQ EDMDSVAENA EYKDRDIESL SLCCYDEMEE VDEHEGQHGI
201: ISRKQLKEMS IMLHVKEAKS PIMLSVKFKE RLWKLS

Best Arabidopsis Sequence Match ( AT1G80490.1 )
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEDEVHNGNW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDRHDR PKAVDILVKD
0101: LKVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPTLRTSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCRLPNDA RAPSPVNNPL LGSLPKAEGF PPLGAHGPFQ PTPSPVPTPL AGWMSSPSSV PHPAVSGGPI ALGAPSIQAL KHPRTPPSNS AVDYPSGDSD
0301: HVSKRTRPMG ISDEVSLGVN MLPMTFPGQA HGHNQTFKAP DDLPKTVART LSQGSSPMSM DFHPIKQTLL LVGTNVGDIG LWEVGSRERL VQKTFKVWDL
0401: SKCSMPLQAA LVKEPVVSVN RVIWSPDGSL FGVAYSRHIV QLYSYHGGED MRQHLEIDAH VGGVNDIAFS TPNKQLCVTT CGDDKTIKVW DAATGVKRYT
0501: FEGHEAPVYS ICPHYKENIQ FIFSTALDGK IKAWLYDNMG SRVDYEAPGR WCTTMAYSAD GTRLFSCGTS KDGESFIVEW NESEGAVKRT YQGFHKRSLG
0601: VVQFDTTKNR YLAAGDDFSI KFWDMDTIQL LTAIDADGGL QASPRIRFNK EGSLLAVSAN DNMIKVMANS DGLRLLHTVE NLSSESSKPA INSIPMVERP
0701: ASVVSIPGMN GDSRNMVDVK PVITEESNDK SKVWKLTEVG EPSQCRSLRL PENMRVTKIS RLIFTNSGNA ILALASNAIH LLWKWQRNDR NATGKATASL
0801: PPQQWQPASG ILMTNDVAET NPEEAVPCFA LSKNDSYVMS ASGGKISLFN MMTFKTMATF MPPPPAATFL AFHPQDNNII AIGMDDSTIQ IYNVRVDEVK
0901: SKLKGHSKRI TGLAFSNVLN VLVSSGADAQ LCVWNTDGWE KQKSKVLQIP QGRSTSSLSD TRVQFHQDQV HFLVVHETQL AIYETTKLEC MKQWPVRESA
1001: APITHATFSC DSQLIYTSFM DATICVFSSA NLRLRCRVNP SAYLPASLSN SNVHPLVIAA HPQESNMFAV GLSDGGVHIF EPLESEGKWG VAPPPENGSA
1101: SAVTATPSVG ASASDQPQR

Arabidopsis Description

TPR1Topless-related protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WV90]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.