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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • extracellular 3
  • endoplasmic reticulum 3
  • vacuole 3
  • plasma membrane 3
  • golgi 3
  • cytosol 2
  • nucleus 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, nucleus, plastid, secretory
BaCelLo:secretory
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:cytosol
 nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH09700 Soybean cytosol 96.38 96.55
KRH44501 Soybean cytosol 94.43 94.35
KRH47407 Soybean cytosol 93.9 94.07
VIT_09s0002g08370.t01 Wine grape cytosol 88.6 88.14
Solyc03g117360.2.1 Tomato nucleus 86.13 86.28
Bra003569.1-P Field mustard cytosol 82.16 85.4
CDY53312 Canola cytosol 82.6 85.31
CDX81729 Canola cytosol 84.1 85.23
AT1G80490.2 Thale cress cytosol 84.19 85.09
CDY36584 Canola cytosol 84.01 85.06
CDX67950 Canola cytosol 84.28 84.88
Bra026112.1-P Field mustard cytosol 83.92 84.82
CDY33387 Canola cytosol 83.75 84.79
AT1G15750.3 Thale cress cytosol 84.72 84.79
Bra026751.1-P Field mustard cytosol 84.54 84.69
CDX79383 Canola cytosol 83.66 84.55
Os03t0254700-01 Rice cytosol 81.54 81.47
GSMUA_Achr4P09920_001 Banana cytosol 82.6 81.3
EER92538 Sorghum cytosol 80.39 80.89
TraesCS4D01G221200.1 Wheat cytosol 81.01 80.86
TraesCS4B01G220900.3 Wheat cytosol 81.1 80.81
TraesCS4A01G083300.2 Wheat cytosol 81.01 80.79
HORVU0Hr1G008690.1 Barley cytosol, endoplasmic reticulum 80.92 80.63
GSMUA_Achr6P36440_001 Banana cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 81.54 79.98
KRH03669 Soybean nucleus 76.15 76.01
KRH20137 Soybean endoplasmic reticulum 76.06 75.99
GSMUA_Achr6P22950_001 Banana plasma membrane 81.63 74.64
KRH33863 Soybean cytosol 18.11 74.55
KRG92932 Soybean nucleus 63.6 63.72
KRG96753 Soybean endoplasmic reticulum 62.9 63.01
KRH68470 Soybean nucleus 62.54 62.65
KRH33861 Soybean cytosol 45.58 61.28
KRH61732 Soybean cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 49.29 52.64
KRH52398 Soybean cytosol 48.76 52.37
KRH05196 Soybean cytosol 24.12 50.28
KRH30800 Soybean mitochondrion 14.05 48.77
Zm00001d050983_P001 Maize cytosol 10.69 48.4
Zm00001d004623_P001 Maize cytosol, plastid 10.78 45.19
Zm00001d027915_P001 Maize cytosol 11.13 40.65
Zm00001d045829_P001 Maize mitochondrion 10.69 37.12
Zm00001d052868_P001 Maize cytosol, peroxisome, plasma membrane 7.07 33.9
Protein Annotations
EntrezGene:100790282MapMan:11.2.2.2MapMan:15.5.53.1Gene3D:2.130.10.10EMBL:ACUP02008474InterPro:CTLH_C
EnsemblPlantsGene:GLYMA_13G367300GO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0006139GO:GO:0006355
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987UniProt:I1M5W3InterPro:IPR001680
InterPro:IPR006594InterPro:IPR006595InterPro:IPR015943InterPro:IPR017986EnsemblPlants:KRH23604ProteinID:KRH23604
ProteinID:KRH23604.1InterPro:LisHPFAM:PF00400ScanProsite:PS00678PFscan:PS50082PFscan:PS50294
PFscan:PS50896PFscan:PS50897InterPro:Quino_amine_DH_bsuInterPro:Quinoprotein_ADH-like_supfamSMART:SM00320SMART:SM00667
SMART:SM00668SUPFAM:SSF50969SUPFAM:SSF50978SUPFAM:SSF50998UniParc:UPI000233B80DInterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeatInterPro:WD40_repeat_CSInterPro:WD40_repeat_domInterPro:WD40_repeat_dom_sfSEG:seg:
Description
hypothetical protein
Coordinates
chr13:-:45285226..45292460
Molecular Weight (calculated)
124726.0 Da
IEP (calculated)
7.043
GRAVY (calculated)
-0.317
Length
1132 amino acids
Sequence
(BLAST)
0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEDEVHNGNW DEVERYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDKHDR SKAVEILVKD
0101: LKVFATFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPNLKNSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCGQPNGA RAPSPANNPL LGSLPKAGGF PPLGAHGPFQ PTPAPVPTPL AGWMSNPTTV AHPAVSGGAI GLGAPSIPAA LKHPRTPPTN PSVDYPSGDS
0301: DHVSKRTRPI GMSDEVNLPV NVLSATFPGH GHGQAFNAPD DLPKTAMRSL NQGSSPMSMD FHPVQQTLLL VGTNVGDIAL WEVGSRERLL MRNFKVWDLS
0401: ACSMPFQAAL VKDPGVSVNR VIWSPDGALF GVAYSRHIVQ IYSYHGGDDV GQHLEIDAHV GGVNDLAFSH PNKQLCVITC GDDKTIKVWD AATGAKQYTF
0501: EGHEAPVYSI CPHYKENIQF IFSTALDGKI KAWLYDNLGS RVDYEAPGRW CTTMAYSADG TRLFSCGTSK EGESSIVEWN ESEGAVKRTY QGFRKRSLGV
0601: VQFDTTKNRY LAAGDDFSIK FWDMDNIQLL TTVDADGGLP ASPRIRFNKD GALLAVSANE NGIKILANAD GIRLLRTLEN SLYDTSRTSE AMTKPTINPI
0701: SAAAAAATSA ALAERASSVV AITAMNGDAR NLGDVKPRIS EESNDKSKIW KLTEINEPSQ CRSLKLPENV RVNKISRLIY TNSGNAILAL ASNAIHLLWK
0801: WQRNDRNSTG KATASVQPQL WQPSSGILMT NDITDNNTED AVPCFALSKN DSYVMSASGG KISLFNMMTF KTMTTFMPPP PAATFLAFHP QDNNIIAIGM
0901: DDSSIQIYNV RVDEVKSKLK GHTKRITGLA FSHVLNVLVS SGADAQICVW NTDGWEKQKS RFLQLPAGRT PPAQADTRVQ FHQDQIRFLV VHETQLAIYE
1001: ATKLECLKQW FPRDSSAPIS HATFSCDSQL IYASFLDATV CVLSVSNLRL RCRINPSAYL SASVSSNVQP LVIAAHPQEP NQFAVGLSDG GVHVFEPHES
1101: EGKWGVPPPI ENGSTSNMAA TSVGASSDEA QR
Best Arabidopsis Sequence Match ( AT1G80490.3 )
(BLAST)
0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEDEVHNGNW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDRHDR PKAVDILVKD
0101: LKVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPTLRTSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCRLPNDA RAPSPVNNPL LGSLPKAEGF PPLGAHGPFQ PTPSPVPTPL AGWMSSPSSV PHPAVSGGPI ALGAPSIQAA LKHPRTPPSN SAVDYPSGDS
0301: DHVSKRTRPM GISDEVSLGV NMLPMTFPGQ AHGHNQTFKA PDDLPKTVAR TLSQGSSPMS MDFHPIKQTL LLVGTNVGDI GLWEVGSRER LVQKTFKVWD
0401: LSKCSMPLQA ALVKEPVVSV NRVIWSPDGS LFGVAYSRHI VQLYSYHGGE DMRQHLEIDA HVGGVNDIAF STPNKQLCVT TCGDDKTIKV WDAATGVKRY
0501: TFEGHEAPVY SICPHYKENI QFIFSTALDG KIKAWLYDNM GSRVDYEAPG RWCTTMAYSA DGTRLFSCGT SKDGESFIVE WNESEGAVKR TYQGFHKRSL
0601: GVVQFDTTKN RYLAAGDDFS IKFWDMDTIQ LLTAIDADGG LQASPRIRFN KEGSLLAVSA NDNMIKVMAN SDGLRLLHTV ENLSSESSKP AINSIPMVER
0701: PASVVSIPGM NGDSRNMVDV KPVITEESND KSKVWKLTEV GEPSQCRSLR LPENMRVTKI SRLIFTNSGN AILALASNAI HLLWKWQRND RNATGKATAS
0801: LPPQQWQPAS GILMTNDVAE TNPEEAVPCF ALSKNDSYVM SASGGKISLF NMMTFKTMAT FMPPPPAATF LAFHPQDNNI IAIGMDDSTI QIYNVRVDEV
0901: KSKLKGHSKR ITGLAFSNVL NVLVSSGADA QLCVWNTDGW EKQKSKVLQI PQGRSTSSLS DTRVQFHQDQ VHFLVVHETQ LAIYETTKLE CMKQWPVRES
1001: AAPITHATFS CDSQLIYTSF MDATICVFSS ANLRLRCRVN PSAYLPASLS NSNVHPLVIA AHPQESNMFA VGLSDGGVHI FEPLESEGKW GVAPPPENGS
1101: ASAVTATPSV GASASDQPQR
Arabidopsis Description
TPR1Topless-related protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WV90]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.