CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH33863	Soybean	cytosol	23.98	98.55
KRH33861	Soybean	cytosol	72.74	97.62
KRH68470	Soybean	nucleus	89.91	89.91
KRG96753	Soybean	endoplasmic reticulum	89.73	89.73
Solyc01g100050.2.1	Tomato	nucleus	84.6	84.45
PGSC0003DMT400063603	Potato	cytosol	84.25	84.1
VIT_14s0060g01680.t01	Wine grape	cytosol	83.54	83.39
CDX80607	Canola	cytosol	77.17	78.07
CDX88252	Canola	cytosol	75.84	77.28
CDY25010	Canola	cytosol	75.84	77.07
Bra020567.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	72.65	77.02
CDY05552	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	75.66	76.96
Bra009930.1-P	Field mustard	cytosol	73.45	76.92
AT5G27030.2	Thale cress	cytosol, endoplasmic reticulum	76.19	75.93
Os01t0254100-01	Rice	nucleus	74.96	75.02
KXG32191	Sorghum	cytosol	74.42	74.76
Zm00001d040279_P012	Maize	cytosol	73.98	74.31
TraesCS3D01G179800.3	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	73.63	73.24
TraesCS3B01G204200.3	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	73.54	73.15
GSMUA_Achr11P...	Banana	cytosol	73.45	73.13
TraesCS3A01G173300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	73.45	73.06
GSMUA_Achr2P00320_001	Banana	cytosol	76.02	72.0
KRH30800	Soybean	mitochondrion	18.85	65.34
KRH44501	Soybean	cytosol	63.98	63.81
KRH23604	Soybean	endoplasmic reticulum	63.72	63.6
KRH47407	Soybean	cytosol	63.54	63.54
KRH20137	Soybean	endoplasmic reticulum	63.27	63.11
KRH03669	Soybean	nucleus	63.27	63.05
KRH09700	Soybean	cytosol	62.48	62.48
Zm00001d008338_P001	Maize	cytosol	59.38	48.24
KRH52398	Soybean	cytosol	43.1	46.2
KRH61732	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	43.27	46.13
KRH05196	Soybean	cytosol	21.15	44.01

Protein Annotations

EntrezGene:100793575	MapMan:11.2.2.2	MapMan:15.5.53.1	Gene3D:2.130.10.10	EMBL:ACUP02012773	InterPro:CTLH_C
EnsemblPlantsGene:GLYMA_20G238400	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	UniProt:I1NJ39	InterPro:IPR001680
InterPro:IPR006594	InterPro:IPR006595	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KRG92932	ProteinID:KRG92932
ProteinID:KRG92932.1	InterPro:LisH	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PFscan:PS50896	PFscan:PS50897	PANTHER:PTHR44083	PANTHER:PTHR44083:SF3	InterPro:Quinoprotein_ADH-like_supfam	SMART:SM00320
SMART:SM00667	SMART:SM00668	SUPFAM:SSF50978	SUPFAM:SSF50998	SUPFAM:SSF82171	InterPro:Topless_fam
UniParc:UPI0002966C2C	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:47007711..47017606

Molecular Weight (calculated)

124817.0 Da

IEP (calculated)

7.366

GRAVY (calculated)

-0.250

Length

1130 amino acids

Sequence
(BLAST)

0001: MTSLSRELVF LILQFLEEEK FKESVHKLEK ESGFFFNMKY FEEKVQAGEW EEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDQQDK AKAVEILVGD
0101: LKMFSTFNEE LYKEITQLLT LTNFRENEQL SKYGDTKTAR SIMLIELKKL IEANPLFRDK LIFPTLKSSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFT
0201: DHTCAPPNGP LAPTPVNLPI AAVAKPAAYT SLGAHGPFPP AAAATANANA LAGWMANASA SSSVQAAVVT ASTMPVPQNQ VPILKRPRTP PANPGMIDYQ
0301: NADHEQLMKR LRPGHSVEEV SYPLARQASW SLDDLPRTVT MTLHQGSSVT SMDFHPSHHT LLLAGSNNGE ISLWELSLRE KLVSKPFKIW DVSACSLPFQ
0401: AAAVKDAPIS VSRVTWSPDG SFVGIAFTKH LIHLYAYTGP NELTQRIEVD AHVGGVNDLS FAHPNKQMCI VTCGDDKLIK VWDLNGRKLF SFEGHEAPVY
0501: SICPHHKENI QFIFSTAIDG KIKAWLYDNM GSRVDYDAPG HWCTTMLYSA DGTRLFSCGT SKDGESFLVE WNESEGAIKR TYNGFRKKST GVVQFDTTQN
0601: RFLAAGEDGQ VKFWDMDNIN LLISSDADGG LQSLPRLRFN KEGNILAVTT VDNGFKILAN ASGLRSLRTI ETPAFEALRS PIESTPIKVS GSSTVNVSPV
0701: NCKVERSSPV RPSPILNGVD PMGRSAEKPR TVEDVIDRAK PWQLSEILDP VQCRSVTMPE STDSSSKVVR LLYTNSAVGI LALGSNGIQK LWKWARSEQN
0801: PTGKATANVV PLHWQPNNGL LMTNDISGVN LEEAVPCIAL SKNDSYVMSA CGGKVSLFNM MTFKVMTTFM PPPPASTFLA FHPQDNNIIA IGMEDSTIHI
0901: YNVRVDEVKS KLKGHQKRIT GLAFSTNLNI LVSSGADAHL CVWSIDTWEK RKSIPIQLPA GKSPVGDTRV QFHSDQLRLL VVHETQLAIY DASKMERIRQ
1001: WVPQDVLSAP ISYAAYSCNS QLIYATFCDA NIGVFDADSL RLRCRIAPSI CLSPAALSGS QGVYPLVVAA HPLEPNQFAV GLTDGSVKVI EPNESEGKWG
1101: TSPPMDNGIL NGRAGSSSTT SNHTADQAQR

Best Arabidopsis Sequence Match ( AT5G27030.1 )
(BLAST)

0001: MSSLSRELVF LILQFLEEEK FKESVHRLEK ESGFFFNTKY FDEKVLAGEW DDVETYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDRQEK AKAVEILVQD
0101: LRVFSTFNEE LYKEITQLLT LQNFRENEQL SKYGDTKTAR GIMLGELKKL IEANPLFRDK LMFPTLRSSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFT
0201: DHTCTLPNGP LAPSAVNQPV TTLTKPAAYP SLGPHVPFPP GPAAANAGAL ASWMAAASGA SAVQAAVVTP ALMPQPQNQM SILKRPRTPP ATPGIVDYQN
0301: PDHELMKRLR PAPSVEEVTY PAPRQQAPWS LEDLPTKAAL ALHQGSTVTS MEFYPMQNTL LLVGSATGEI TLWELAARER LVSRPFKIWD MSNCSHQFQA
0401: LIAKETPISV TRVAWSPDGN FIGVAFTKHL IQLYAFSGPN DLRQHTEIDA HVGAVNDLAF ANPNRQLCVI TCGDDKLIKV WDVSGRKHFT FEGHDAPVYS
0501: ICPHYKENIQ FIFSTAIDGK IKAWLYDNLG SRVDYDAPGK WCTRMLYSAD GTRLFSCGTS KDGDSFLVEW NESEGSIKRT YKEFQKKLAG VVQFDTSKNH
0601: FLAVGEDGQI KFWDMNNINV LTSTDAEGGL PALPHLRFNK DGNLLAVTTA DNGFKILANP AGFRSLRAME TPASETMRTP VDFKAVPGAP VASVNCKVER
0701: GSPVRHSQML NGVDPSKSRI DDSTDKPKSW QLAEILDPSQ CFQATLPDTA GSSTKVVQLL YTNSGAGILA LGSNGIQRLW KWVPNEQNPS GKATATVVPQ
0801: HWQPNSGLLM TNDVSGVNLE NAAPCIALSK NDSYVMSAAG GKVSLFNMMT FKVMTTFMPP PPASTFLAFH PQDNNVIAIG MEDSTIHIYN VRVDEVKSKL
0901: KGHQKRITGL AFSTALNILV SSGADAQICF WSIDTWEKRK SVAIQMPAGK AANGDTRVQF HVDQLRILVV HETQLAVFDA SKMECIRQWI PQDSLSAPIS
1001: SAVYACNSQL IYTTFRDGNI GVFDADSLRL RCRISPSAYL PQGNQGLSPL VVAAHPQDPN QFAVGLNDGS VKMMEPTEGE GKWGMIPPSE AINSPSTTSN
1101: QTPEQLQR

Arabidopsis Description

TPR3TOPLESS-related 3 [Source:UniProtKB/TrEMBL;Acc:F4K2T3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.