Factsheet for GSMUA_Achr11P05370_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH33863	Soybean	cytosol	20.18	83.27
GSMUA_Achr2P00320_001	Banana	cytosol	84.76	80.64
KXG32191	Sorghum	cytosol	76.92	77.6
Os01t0254100-01	Rice	nucleus	77.09	77.5
Zm00001d040279_P012	Maize	cytosol	76.3	76.98
HORVU3Hr1G035170.2	Barley	cytosol	75.15	75.49
TraesCS3B01G204200.3	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	75.15	75.09
TraesCS3D01G179800.3	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	75.15	75.09
TraesCS3A01G173300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	75.07	75.0
KRG92932	Soybean	nucleus	73.13	73.45
Solyc01g100050.2.1	Tomato	nucleus	71.81	72.0
KRH68470	Soybean	nucleus	71.63	71.95
KRG96753	Soybean	endoplasmic reticulum	71.37	71.68
PGSC0003DMT400063603	Potato	cytosol	71.45	71.64
CDY67912	Canola	cytosol	37.27	71.21
KRH33861	Soybean	cytosol	51.98	70.07
AT3G16830.1	Thale cress	cytosol	69.52	69.76
CDX80607	Canola	cytosol	67.49	68.58
CDY05552	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	67.05	68.5
CDX95900	Canola	cytosol	68.55	68.49
Bra020567.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	64.32	68.48
CDY25010	Canola	cytosol	67.05	68.44
Bra022181.1-P	Field mustard	cytosol	68.19	68.37
CDX92100	Canola	cytosol	68.19	68.37
CDX88252	Canola	cytosol	65.73	67.27
Bra009930.1-P	Field mustard	cytosol	63.44	66.73
AT5G27030.2	Thale cress	cytosol, endoplasmic reticulum	66.26	66.31
CDY50500	Canola	cytosol	29.25	65.74
Bra021203.1-P	Field mustard	cytosol	68.99	62.39
GSMUA_Achr4P05650_001	Banana	cytosol	61.94	62.05
GSMUA_Achr1P10830_001	Banana	cytosol	62.2	61.82
CDY50502	Canola	cytosol, plastid	68.99	61.56
GSMUA_Achr4P12340_001	Banana	cytosol	61.59	61.42
GSMUA_Achr4P11600_001	Banana	cytosol	61.06	60.9
GSMUA_Achr4P09920_001	Banana	cytosol	61.41	60.61
GSMUA_Achr6P36440_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	60.09	59.1
GSMUA_Achr1P15460_001	Banana	endoplasmic reticulum, extracellular	20.62	58.94
GSMUA_Achr4P04560_001	Banana	cytosol	60.53	58.82
GSMUA_Achr1P15450_001	Banana	cytosol	40.88	56.45
GSMUA_Achr6P22950_001	Banana	plasma membrane	60.26	55.25
KRH30800	Soybean	mitochondrion	14.36	50.0
GSMUA_AchrUn_...	Banana	cytosol	49.6	49.26
Zm00001d008338_P001	Maize	cytosol	60.09	49.03
VIT_04s0008g06360.t01	Wine grape	cytosol	3.17	46.75
VIT_04s0008g06370.t01	Wine grape	cytosol	9.6	30.62

Protein Annotations

MapMan:11.2.2.2	MapMan:15.5.53.1	Gene3D:2.130.10.10	InterPro:CTLH_C	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr11G05370_001	EnsemblPlants:GSMUA_Achr11P05370_001	EnsemblPlants:GSMUA_Achr11T05370_001	InterPro:IPR001680	InterPro:IPR006594
InterPro:IPR006595	InterPro:IPR015943	InterPro:IPR017986	InterPro:LisH	UniProt:M0RPL7	PFAM:PF00400
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PFscan:PS50896	PFscan:PS50897	PANTHER:PTHR44083
PANTHER:PTHR44083:SF3	SMART:SM00320	SMART:SM00667	SMART:SM00668	SUPFAM:SSF50978	InterPro:Topless_fam
UniParc:UPI000294B2DC	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
SEG:seg	:	:	:	:	:

Description

Topless-related protein 2 [Source:GMGC_GENE;Acc:GSMUA_Achr11G05370_001]

Coordinates

chr11:-:3989999..4000677

Molecular Weight (calculated)

125629.0 Da

IEP (calculated)

7.040

GRAVY (calculated)

-0.280

Length

1135 amino acids

Sequence
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKESVHKLEQ EAGFFFNMKY FEEKVQAGEW EEAEKYLSGY TKVDDNRYSM KIFFEIRKQK YLEALDRHDR AKAVETLIKD
0101: LKVFSTFNED LYKEITQLLT LENFRENEQL SKYGDTKSAR STMLVELKKL IEANPLFREK LVFPTLKASR LRTLINQSLN WQHQLCKTPR SNPDIKTLFM
0201: DHACAPPNGA RASPVSVPVA AVPKAVGTYT PLGAHGPFPP QAAANASALA GWMANAAASS SVQSAVVAPS SIPLPPNQVP ILKRPRTPPN AIGMSNYQNA
0301: ESEQMMKRLR SGAHPVDEVS YPAPHPQVTW SLDDLPRVVA CSLTEGSNVT SMDFHPFHHT SLLVGSNTGE ITLWEIGIQQ KLVSKPFRVW DTAACVLCIL
0401: QSAIVKDSSI SVTRVIWSPD GSLIGVAFSK HLIHIHEYQA PNDLHFFFSY QIDAHVGGVN DIAFSQRDER LCVVTCGDDK LIKVWDLSGQ RLYVFEGHEA
0501: PVYSICPHRK ENIQFIFSTS VDGKIKAWLY DNVGSMVDFN TPGHLFTTMV YSADGSRLFS CGTSKDGDCI LVEWNESEGS IKRQYSGFRK KSTVVVQFDT
0601: SQNHFLAAGE DNQIKFWSVD SINMLASTDA DGGLPSRPHL RFNKKGNLLA VATVDNGFKV LANADGLAAL RAFGNRSFEP FRAQHEATPI RVSNSPVVAS
0701: ISPNISNVES LDRNSPAKPS TVLNGGDITP RNVDKPRISE ELPDKMKSWE LAEVFNPQQC RVATMPETDS ASKVTRLLYT NSGVGLLALG SNAIQRVWKW
0801: SRNEQNPSGK ATASVVPQHW QPNSGLLMTN DVSDTSPEEA VPCIALSKND SYVMSACGGK VSLFNMMTFK VMTTFMSPPP ASTFLAFHPQ DNNIIAIGME
0901: DSTIHIYNVK VDEVQTKLKG HQKRISGLAF SNNLNILVSS GADAQLYIWS TETWEKKKSV AIQLPEGTKS VGDTRVQFNS DQSRLLVVHE TQLAIYDTLK
1001: IERIHQWVPQ DALPAPISYA SYSCFSELVY ASFCDGNIGV FDADNLRLRC RIAPSAYTSP AAASSNPTYP LVIAAHPQEP NQFAVGLTDG AVKVIEPSKS
1101: EGRWGAPTPV DNGVHVRRMQ TLSTTSNPAA DQPQR

Best Arabidopsis Sequence Match ( AT3G16830.1 )
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKESVHKLEQ ESGFFFNIKY FEEKALAGEW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDRNDR AKAVEILAKD
0101: LKVFATFNEE LYKEITQLLT LENFRENEQL SKYGDTKSAR SIMYTELKKL IEANPLFREK LAFPSFKASR LRTLINQSLN WQHQLCKNPR PNPDIKTLFL
0201: DHSCSPSNGA RALTPVNLPV AAVARPSNFV PLGVHGGPFQ SNPAPAPNAN ALAGWMANPN PSSSVPSGVV AASPFPMQPS QVNELKHPRA PSNSLGLMDY
0301: QSADHEQLMK RLRSAQTSNE VTYPAHSHPP ASLDDLPRNV VSTIRQGSVV ISMDFHPSHH TLLAVGCSSG EVTLWEVGSR EKVVTEPFKI WNMAACSVIF
0401: QGSIVKEPSI SVTRVAWSPD GNLLGVSFTK HLIHVYAYQG SDLRQHLEID AHVGCVNDLA FAHPNKQMCV VTCGDDKLIK VWDLSGKKLF TFEGHEAPVY
0501: SICPHQKENI QFIFSTALDG KIKAWLYDNV GSRVDYDAPG QWCTTMLYSA DGSRLFSCGT SKEGDSFLVE WNESEGALKR TYLGFRKKSA GVVQFDTTRN
0601: RFLAVGEDNQ IKFWNMDNTN LLTVVEAEGG LPNLPRLRFN KDGNLLAVTT ADNGFKILAN TDGLRTLRAF EARSFEASKA SIDMKVSTSA MASSISPAIG
0701: KIEHMDAGSP ARPTPIPNGI EAMSRTMEKP RNLDSVDKSK PLELTEIVDP TQCRQVTMPD SKDSVSKVAR LLYTNSGVGV LALGSNGVQR LWKWIRNEQN
0801: PTGKATASVT PQHWQPNSGL LMANDVPENP EGSVPCIALS KNDSYVMSAC GGKVSLFNMM TFKVMTTFMP PPPASTFLAF HPQDNNIIAI GMEDSSIHIY
0901: NVRVDEVKTK LKGHQKHITG LAFSTALNIL VSSGADAQLF FWTADSWEKK KSSAIQLPPG KAPVGDTRVQ FHNDQIQLLV SHETQLAIYD ASKMECIHKW
1001: VPQEALSSPI TSASYSCNSQ LVYASFADGN IAVFDAESLR LRCRIAPSAY MPQPTPNSAP IFPQVITAHP QEPNQLAVGL SDGSVKVIEP SELSRRWGVG
1101: VAAGSDKAGT ENGRPSSSSA ANNSSSDQIQ R

Arabidopsis Description

TPR2Topless-related protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRZ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.