CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 5
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67912	Canola	cytosol	46.54	99.66
CDY50500	Canola	cytosol	37.42	94.26
CDX92100	Canola	cytosol	83.57	93.9
AT3G16830.1	Thale cress	cytosol	83.49	93.9
CDX95900	Canola	cytosol	83.49	93.49
Bra021203.1-P	Field mustard	cytosol	88.84	90.04
KXG32191	Sorghum	cytosol	63.29	71.56
Zm00001d040279_P012	Maize	cytosol	62.74	70.93
Os01t0254100-01	Rice	nucleus	62.66	70.59
TraesCS3D01G179800.3	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	62.5	69.98
TraesCS3B01G204200.3	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	62.34	69.81
TraesCS3A01G173300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	62.26	69.72
CDY25010	Canola	cytosol	60.69	69.42
CDY05552	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	60.61	69.4
CDX80607	Canola	cytosol	60.93	69.38
GSMUA_Achr11P...	Banana	cytosol	61.56	68.99
CDX88252	Canola	cytosol	59.83	68.62
GSMUA_Achr2P00320_001	Banana	cytosol	62.97	67.14
CDY36584	Canola	cytosol	55.58	63.24
CDY33387	Canola	cytosol	55.35	62.97
CDY53312	Canola	cytosol	54.17	62.87
CDX81729	Canola	cytosol	55.11	62.76
CDX67950	Canola	cytosol	54.8	62.01
CDX79383	Canola	cytosol	54.48	61.88
CDX82426	Canola	cytosol	52.67	59.13
CDX75851	Canola	cytosol	52.59	59.05
CDY20161	Canola	cytosol	52.2	58.61
CDY21881	Canola	cytosol	51.97	58.34
Zm00001d008338_P001	Maize	cytosol	51.57	47.16
CDY04683	Canola	mitochondrion	4.32	44.35
CDX79301	Canola	cytosol	5.74	33.64
CDX83225	Canola	cytosol	17.14	29.14
CDY38509	Canola	cytosol	17.53	29.11
CDY12727	Canola	golgi	6.53	23.92

Protein Annotations

MapMan:11.2.2.2	MapMan:15.5.53.1	Gene3D:2.130.10.10	GO:A0A078IKS8	UniProt:A0A078IKS8	EnsemblPlants:CDY50502
ProteinID:CDY50502	ProteinID:CDY50502.1	InterPro:CTLH_C	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00096899001	InterPro:IPR001680	InterPro:IPR006594	InterPro:IPR006595	InterPro:IPR015943
InterPro:IPR017986	InterPro:LisH	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PFscan:PS50896	PFscan:PS50897	PANTHER:PTHR44083	PANTHER:PTHR44083:SF3	InterPro:Quinoprotein_ADH-like_supfam	SMART:SM00320
SMART:SM00667	SMART:SM00668	SUPFAM:SSF50978	SUPFAM:SSF50998	InterPro:Topless_fam	UniParc:UPI0004EEC4C9
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

BnaC01g44400DBnaC01g44400D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IKS8]

Coordinates

chrLK032918:-:25354..31357

Molecular Weight (calculated)

141512.0 Da

IEP (calculated)

8.450

GRAVY (calculated)

-0.384

Length

1272 amino acids

Sequence
(BLAST)

0001: MWRTPVSSAQ STSILFIESA SKRVIIPYVT SHTLLMHFNR TRVVIREREH GSHFCFPSWA EPHQIRTQTK GIRHKRGYQQ QDRLSKISET TYQNYTVSFI
0101: FFLVVATRGG GRNPRKPHSL NRFDQPLTTH QILQGEKMSS LSRELVFLIL QFLDEEKFKE SVHKLEQESG FYFNIKYFEE KALAGEWDEV EKYLSGFTKV
0201: DDNRYSMKIF FEIRKQKYLE ALDRNDRAKA VEILAKDLKV FATFNEELYK EITQLLTLEN FRENEQLSKY GDTRSARSIM YTELKKLIEA NPLFREKLAF
0301: PSFKASRLRT LINQSLNWQH QLCKNPRPNP DIKTLFLDHS CNAANGGARA ITPVNLPVAA VARPSNFVPL GVHGGPFQAS AAPAPNPNAL AGWMANPHPS
0401: SSVPSGVVSA SPFQLQQPNQ VNVLKHPRAP SNSLGLMDYQ NADHEQLMKR LRSAQTSNEV TYPAHPPHPS ASLDDLPRNV VSTMRQGSVV MSMDFHPAHH
0501: TLLAVGCSSG EVSLWEVGSK EKIVTQPFKI WNMAACTGIF QGTIVKEPSI SVTRVAWSPD GNLIGVSFTK HLIHVYAYQG SELRQHLEID AHVGCVNDLA
0601: FAHPNKQMCV VTCGDDKLIK VWDLSGKKLY TFEGHDAQVY SICPHQKENI QFIFSTALDG KIKAWLYDNV GSRVDYDAPG QWCTTMLYSA DGSRLFSCGT
0701: SKEGDSFLVE WNESEGALKR TYQGFRKKSN GVVQFDTTRN RYLAVGEDNQ VKFWDMDNTN LLTTVDAEGG LPNLPRLRFN KEGNLLAVTT ADNGFKILAN
0801: ADGLRTLRAY EARSYEASKA SIDMKVSTSA MVSSMSPAAV GKVEHMDTDS PARPTPIHNG IEAMSRTMEK PRHLESVDKK PLELTEIVDP TQCRQVTMPD
0901: SKDSVSKVAR LLYTNSGVGV LALGANGVQR LWKWSRNEQN PTGKATASVT PQHWQPNSGL LMANDVPENP ETAVPCIALS KNDSYVMSAC GGKVSLFNMM
1001: TFKVMTTFMP PPPASTFLAF HPQDNNIIAI GMEDSSIHIY NVRVDEVKTK LKGHQKHITG LAFSTALNTL VSSGADAQLF FWTADSWEKK KSSVIQLPPG
1101: KAPVGDTRVQ FHNDQIHLLV SHETQLAIYD ASKMECIHKW VPQEALSSPI TSASYSCNSQ LVYASFNDGN IAVFDAESLR LRCRIAPSAY MPQPTPNSAP
1201: IIPQVITAHP QEPNQLAVGL SDGSVKVIEP SEASRRWGVG VAVTADKAGA ENGRPSSSSA ANNSSSDHQI QR

Best Arabidopsis Sequence Match ( AT3G16830.1 )
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKESVHKLEQ ESGFFFNIKY FEEKALAGEW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDRNDR AKAVEILAKD
0101: LKVFATFNEE LYKEITQLLT LENFRENEQL SKYGDTKSAR SIMYTELKKL IEANPLFREK LAFPSFKASR LRTLINQSLN WQHQLCKNPR PNPDIKTLFL
0201: DHSCSPSNGA RALTPVNLPV AAVARPSNFV PLGVHGGPFQ SNPAPAPNAN ALAGWMANPN PSSSVPSGVV AASPFPMQPS QVNELKHPRA PSNSLGLMDY
0301: QSADHEQLMK RLRSAQTSNE VTYPAHSHPP ASLDDLPRNV VSTIRQGSVV ISMDFHPSHH TLLAVGCSSG EVTLWEVGSR EKVVTEPFKI WNMAACSVIF
0401: QGSIVKEPSI SVTRVAWSPD GNLLGVSFTK HLIHVYAYQG SDLRQHLEID AHVGCVNDLA FAHPNKQMCV VTCGDDKLIK VWDLSGKKLF TFEGHEAPVY
0501: SICPHQKENI QFIFSTALDG KIKAWLYDNV GSRVDYDAPG QWCTTMLYSA DGSRLFSCGT SKEGDSFLVE WNESEGALKR TYLGFRKKSA GVVQFDTTRN
0601: RFLAVGEDNQ IKFWNMDNTN LLTVVEAEGG LPNLPRLRFN KDGNLLAVTT ADNGFKILAN TDGLRTLRAF EARSFEASKA SIDMKVSTSA MASSISPAIG
0701: KIEHMDAGSP ARPTPIPNGI EAMSRTMEKP RNLDSVDKSK PLELTEIVDP TQCRQVTMPD SKDSVSKVAR LLYTNSGVGV LALGSNGVQR LWKWIRNEQN
0801: PTGKATASVT PQHWQPNSGL LMANDVPENP EGSVPCIALS KNDSYVMSAC GGKVSLFNMM TFKVMTTFMP PPPASTFLAF HPQDNNIIAI GMEDSSIHIY
0901: NVRVDEVKTK LKGHQKHITG LAFSTALNIL VSSGADAQLF FWTADSWEKK KSSAIQLPPG KAPVGDTRVQ FHNDQIQLLV SHETQLAIYD ASKMECIHKW
1001: VPQEALSSPI TSASYSCNSQ LVYASFADGN IAVFDAESLR LRCRIAPSAY MPQPTPNSAP IFPQVITAHP QEPNQLAVGL SDGSVKVIEP SELSRRWGVG
1101: VAAGSDKAGT ENGRPSSSSA ANNSSSDQIQ R

Arabidopsis Description

TPR2Topless-related protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRZ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.