CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12727	Canola	golgi	55.65	19.88
CDY67912	Canola	cytosol	44.35	9.26
CDX88252	Canola	cytosol	60.48	6.76
CDY05552	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	60.48	6.75
CDX80607	Canola	cytosol	60.48	6.71
CDY25010	Canola	cytosol	59.68	6.65
CDY53312	Canola	cytosol	50.0	5.66
CDX81729	Canola	cytosol	50.0	5.55
CDY36584	Canola	cytosol	50.0	5.55
CDY33387	Canola	cytosol	50.0	5.55
CDX79383	Canola	cytosol	50.0	5.54
CDX67950	Canola	cytosol	50.0	5.52
CDY20161	Canola	cytosol	47.58	5.21
CDY21881	Canola	cytosol	47.58	5.21
CDX75851	Canola	cytosol	46.77	5.12
CDX82426	Canola	cytosol	46.77	5.12
CDX92100	Canola	cytosol	44.35	4.86
CDX95900	Canola	cytosol	44.35	4.84
CDY50502	Canola	cytosol, plastid	44.35	4.32
CDX79301	Canola	cytosol	4.84	2.76
CDX83225	Canola	cytosol	14.52	2.41
CDY38509	Canola	cytosol	14.52	2.35
CDY50500	Canola	cytosol	0.0	0.0
HORVU4Hr1G034270.1	Barley	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY04683	EnsemblPlantsGene:GSBRNA2T00119295001	GO:A0A078EYH2	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Topless_fam	PANTHER:PTHR44083	PANTHER:PTHR44083:SF3
ProteinID:CDY04683	ProteinID:CDY04683.1	UniParc:UPI0004EF3E69	MapMan:35.1	:	:

Description

BnaC05g17210D

Coordinates

chrLK031956:-:869482..871227

Molecular Weight (calculated)

13890.1 Da

IEP (calculated)

10.598

GRAVY (calculated)

0.067

Length

124 amino acids

Sequence
(BLAST)

001: MLTQVKKLIE ANLLFRVKLT FPTLRSSRLQ TLINQSLNWQ HQLCKILPDI KMLFTNHTYA VSNGPLAPSS VNQPVTTLTK PTAFPSLGAH GINLNPFRPG
101: TVAAANAAKW PWVCYDHLIY HITI

Best Arabidopsis Sequence Match ( AT5G27030.1 )
(BLAST)

0001: MSSLSRELVF LILQFLEEEK FKESVHRLEK ESGFFFNTKY FDEKVLAGEW DDVETYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDRQEK AKAVEILVQD
0101: LRVFSTFNEE LYKEITQLLT LQNFRENEQL SKYGDTKTAR GIMLGELKKL IEANPLFRDK LMFPTLRSSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFT
0201: DHTCTLPNGP LAPSAVNQPV TTLTKPAAYP SLGPHVPFPP GPAAANAGAL ASWMAAASGA SAVQAAVVTP ALMPQPQNQM SILKRPRTPP ATPGIVDYQN
0301: PDHELMKRLR PAPSVEEVTY PAPRQQAPWS LEDLPTKAAL ALHQGSTVTS MEFYPMQNTL LLVGSATGEI TLWELAARER LVSRPFKIWD MSNCSHQFQA
0401: LIAKETPISV TRVAWSPDGN FIGVAFTKHL IQLYAFSGPN DLRQHTEIDA HVGAVNDLAF ANPNRQLCVI TCGDDKLIKV WDVSGRKHFT FEGHDAPVYS
0501: ICPHYKENIQ FIFSTAIDGK IKAWLYDNLG SRVDYDAPGK WCTRMLYSAD GTRLFSCGTS KDGDSFLVEW NESEGSIKRT YKEFQKKLAG VVQFDTSKNH
0601: FLAVGEDGQI KFWDMNNINV LTSTDAEGGL PALPHLRFNK DGNLLAVTTA DNGFKILANP AGFRSLRAME TPASETMRTP VDFKAVPGAP VASVNCKVER
0701: GSPVRHSQML NGVDPSKSRI DDSTDKPKSW QLAEILDPSQ CFQATLPDTA GSSTKVVQLL YTNSGAGILA LGSNGIQRLW KWVPNEQNPS GKATATVVPQ
0801: HWQPNSGLLM TNDVSGVNLE NAAPCIALSK NDSYVMSAAG GKVSLFNMMT FKVMTTFMPP PPASTFLAFH PQDNNVIAIG MEDSTIHIYN VRVDEVKSKL
0901: KGHQKRITGL AFSTALNILV SSGADAQICF WSIDTWEKRK SVAIQMPAGK AANGDTRVQF HVDQLRILVV HETQLAVFDA SKMECIRQWI PQDSLSAPIS
1001: SAVYACNSQL IYTTFRDGNI GVFDADSLRL RCRISPSAYL PQGNQGLSPL VVAAHPQDPN QFAVGLNDGS VKMMEPTEGE GKWGMIPPSE AINSPSTTSN
1101: QTPEQLQR

Arabidopsis Description

TPR3TOPLESS-related 3 [Source:UniProtKB/TrEMBL;Acc:F4K2T3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.