CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000550.1-P	Field mustard	cytosol	80.88	98.37
CDY38509	Canola	cytosol	96.52	94.26
AT2G25420.4	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	72.06	72.16
CDY50500	Canola	cytosol	16.98	25.15
VIT_11s0016g05620.t01	Wine grape	cytosol	34.49	22.79
KRH20137	Soybean	endoplasmic reticulum	33.96	22.42
KRH03669	Soybean	nucleus	33.96	22.4
CDY53312	Canola	cytosol	32.75	22.35
CDY21881	Canola	cytosol	33.16	21.89
CDX81729	Canola	cytosol	32.49	21.75
CDY20161	Canola	cytosol	32.89	21.71
PGSC0003DMT400079377	Potato	cytosol	32.89	21.69
CDY33387	Canola	cytosol	32.35	21.65
CDX82426	Canola	cytosol	32.75	21.62
CDX75851	Canola	cytosol	32.75	21.62
CDX67950	Canola	cytosol	32.49	21.62
CDX79383	Canola	cytosol	32.35	21.61
CDY36584	Canola	cytosol	32.22	21.56
Solyc07g008040.2.1	Tomato	nucleus	30.35	20.69
CDY05552	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	29.41	19.8
CDY25010	Canola	cytosol	29.41	19.78
CDX80607	Canola	cytosol	29.14	19.52
CDX88252	Canola	cytosol	28.88	19.48
CDX95900	Canola	cytosol	28.74	18.93
CDX92100	Canola	cytosol	28.61	18.9
CDY50502	Canola	cytosol, plastid	29.14	17.14
CDY67912	Canola	cytosol	11.9	14.98
CDY04683	Canola	mitochondrion	2.41	14.52
CDX79301	Canola	cytosol	3.61	12.44
CDY12727	Canola	golgi	5.21	11.24

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	GO:A0A078D285	EnsemblPlants:CDX83225	ProteinID:CDX83225	ProteinID:CDX83225.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00138772001	InterPro:IPR001680	InterPro:IPR006594
InterPro:IPR015943	InterPro:IPR017986	InterPro:LisH	PFAM:PF00400	PFscan:PS50082	PFscan:PS50294
PFscan:PS50896	PANTHER:PTHR44083	SMART:SM00320	SMART:SM00667	SUPFAM:SSF50978	InterPro:Topless_fam
UniParc:UPI0004EE3D23	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:

Description

BnaA03g22810D

Coordinates

chrLK031832:-:524690..528529

Molecular Weight (calculated)

83968.5 Da

IEP (calculated)

7.757

GRAVY (calculated)

-0.232

Length

748 amino acids

Sequence
(BLAST)

001: MGDSTMILDE TNRKNLIFLI LQFLHEEGYE KSLHLLEQDS GAFFDYSYFS GFITNGKWKD AEDYLSAFTS PHTNTFSRKM FFDLYKCKFS EAPDRSGGSE
101: SANIFSNDLR RIPDYYYFKI PEKTGSVDKA LVRASLCVDL RKLAESNPSL CGKLVFPNLN KSALLSLISL ICPNSNVRMG GSKEDLIRLI LQFLHEAKYK
201: NTLHRFEQET KVFFNVNYLA EVMKLGEMGK AEEYLAAFTD KHANIYSKAM FLELQKLKCF HSDEYCFSYC REATTPSGSL DNTTSQKTKL LASVGMLAKK
301: NPALRDKLSF PKMAKSRLLT LMKQTMDWWR PHSCSNSKSL EDIPVVPYLC GEPSSLENKL NRTKVGNCKL KEINHPSECS SLVLPNYWSG ERIACLTYSP
401: CGDYILALAD DATHKLWTWS TGQNEFCKHT PRVLKEDVFP KPRLHQPMSG KTMKNETATS VEDSTSCFAI KGSYLFSTSG GKIAVFDLKS FERVASFGSP
501: IKPTATYFIF IPVDLLAVGL DDGSILIHCL SSRKIKEKLD GHDQRITCLA FSRCFNVLVS SGADGKLCVW STKRWLKLTS IDSIQNFCTR RNNVSSLVTQ
601: IQFDPYQIEL LVVQDKWISR HAAPTLDCLS QWVPDESEAA ITSATYSSDG EIICVGFRSE SIKILDSMTF LIKCRINLTA FTQPIPSNIR VKVYPAVVAA
701: HPSHPSQISV GLSNGKVIIL QPLGRGGWGE ADALEDDGDN SDGLEHCY

Best Arabidopsis Sequence Match ( AT2G25420.4 )
(BLAST)

001: MILDEKNRKN LVFLILQFFD EEGYEESLHL LEQDSGVFFD FSYLSNAILN GNWKDADDYL SAFTSPEANT FSRKMFFGLF KLKFSEAPDR SGGSEAVKIF
101: SKDLRRIPVL KDDSFDDLVE VIAVDDMRIP EETCCVDKAP GRAKLCVDLH KLAESNPSLR GKLDFPSLNK SALLALISLL CPNCSRRKGG LKEDLICLIL
201: QFLYEAKYKN TLHKLEQETK VFFNLNYLAE VMKLGEYGKA EEYLGAFTNW EDNKYSKAMF LELQKLICLQ STEWEVATPS GSLDNMSLKI KLHASVAMLA
301: KKNPVLKDEL KFPSMEKSRL LTLVKQTMDW WTCNNTSSLE NVPVVSYLCG TPSSMKFFFK KTVPRKKKPN EIKDPSQCNA LVLPDCFSEE KIARLTYSPS
401: GDYILALAED ATHKLWTWSS SQNEFCKYTP KILKENVYPK PRLHQPQSGK TMENEMATSV QKSTSCFAVK GSYLFSTSGG KIAVFDLKNF EKVASFGSPT
501: PMATYFIFIP GDLLAVGLDD GSIFIHCLSS RKVKEKLEGH DQKITCLAFS RCFNVLVSSD SDGKLCLWST KSWVKLTSKN STRKFCNRSN LESTSLVTHI
601: QFDPYQIELL VVHDGWIGLY EVRTLDCRLQ WIPDASDPAI TSATYSSDGE IIYVGFRCGS IKIVDSKTFM TLCQINLTSF TQLSTSNISL EVYPTVVAAH
701: PSHPNQISAG LSNGKVIVLQ PLWSGGWGEA APLEDNGDYS NDSDHSY

Arabidopsis Description

transducin family protein / WD-40 repeat family protein [Source:TAIR;Acc:AT2G25420]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.