CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20161	Canola	cytosol	98.85	98.85
CDX82426	Canola	cytosol	93.47	93.47
AT3G15880.2	Thale cress	cytosol	93.38	93.05
CDX75851	Canola	cytosol	93.03	93.03
Solyc03g116750.2.1	Tomato	nucleus	75.99	76.06
VIT_09s0002g07020.t01	Wine grape	cytosol	75.82	75.48
CDY53312	Canola	cytosol	67.26	69.53
CDX81729	Canola	cytosol	68.49	69.47
CDY36584	Canola	cytosol	68.49	69.41
CDX67950	Canola	cytosol	68.76	69.31
CDX79383	Canola	cytosol	68.49	69.29
CDY33387	Canola	cytosol	68.14	69.05
CDY67912	Canola	cytosol	34.6	65.99
CDY25010	Canola	cytosol	59.75	60.88
CDX80607	Canola	cytosol	59.93	60.79
CDY05552	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	59.58	60.76
CDX88252	Canola	cytosol	59.05	60.32
CDX92100	Canola	cytosol	58.43	58.48
CDX95900	Canola	cytosol	58.43	58.27
CDY50502	Canola	cytosol, plastid	58.34	51.97
CDY50500	Canola	cytosol	21.89	49.11
CDY04683	Canola	mitochondrion	5.21	47.58
CDX83225	Canola	cytosol	21.89	33.16
CDY38509	Canola	cytosol	22.07	32.64
CDX79301	Canola	cytosol	5.91	30.88
CDY12727	Canola	golgi	7.59	24.78

Protein Annotations

MapMan:11.2.2.2	MapMan:15.5.53.1	Gene3D:2.130.10.10	GO:A0A078G920	UniProt:A0A078G920	EnsemblPlants:CDY21881
ProteinID:CDY21881	ProteinID:CDY21881.1	InterPro:CTLH_C	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
EnsemblPlantsGene:GSBRNA2T00018190001	InterPro:IPR001680	InterPro:IPR006594	InterPro:IPR006595	InterPro:IPR015943	InterPro:IPR017986
InterPro:LisH	PFAM:PF00400	PFscan:PS50082	PFscan:PS50294	PFscan:PS50896	PFscan:PS50897
PANTHER:PTHR44083	PANTHER:PTHR44083:SF1	InterPro:Quino_amine_DH_bsu	InterPro:Quinoprotein_ADH-like_supfam	SMART:SM00320	SMART:SM00667
SMART:SM00668	SUPFAM:SSF50969	SUPFAM:SSF50998	SUPFAM:SSF82171	InterPro:Topless_fam	UniParc:UPI0004EE0595
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	SEG:seg	:	:

Description

BnaC01g35670DBnaC01g35670D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G920]

Coordinates

chrLK032125:-:476851..483219

Molecular Weight (calculated)

123724.0 Da

IEP (calculated)

7.359

GRAVY (calculated)

-0.335

Length

1133 amino acids

Sequence
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKDTVHRLEK ESGFFFNMRY FEDCITAGEW DDVEKYLSGF TKADDNRYSM KIFFEIRKQK YLEALDKKDH AKAVEILAKE
0101: LKVFSTFNEE LFKEITMLLT LTNFRENEQL SKYGDTKSAR GIMLGELKKL IEANPLFRDK LQFPTLKNSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCGHPNGS HVPSPVTNHL MGSVSKVGGF PPLGAHGPFQ PTPAPLTTSL AGWMPNPSVS HPAVSAGPIG LGAPNSAVSM LKRPRTPPTN SLSMDYQTAD
0301: SESVLKRPRP FGISEGVNNH PVNVLPVTYP GQNHAHAAYS TDDLPKTVSR VLSQGSAIKS MDFHPVQQTM LLVGTNLGDI AIWEVGSRDK LASRSFKVWD
0401: LATCTGNLQA SLASEYTAAV NRVIWSPDGG LLGVAYSKHI VHIYSYHGGD DLRNHLEIDA HAGNVNDLAF SQPNQELCVV TCGEDKTIKV WSAVTGNKLH
0501: TFEGHEAPVY SVCPHQKENI QFIFSTAVDG RIKAWLYDNM GSRVDYDAPG RSCTAMAYSA DGTRLFSCGT SKEGESFIVE WNESEGAVKR TYLGLGKRSA
0601: GVVQFDTLKN KFLVAGDEFH VKFWDMDSVE LLTTTNADGG LPSSPCLRIN KEGTLLAVST TENGIKILAN AEGSRILHSM ANRGLESSRP PPGSVSKGPI
0701: VGTFGTPSSS TGMSLSMAER SGPGAAGTVM NGDTRSLSDV KPRIPDEAER SKVWKLAEIS ERSQLRTLRL PDTLLPGRIV KLIYTNSGGA ILALAENALH
0801: KLWKWQKSER NLSGKANSNV PPQLWQPPNG VLMTNDTREG NKEDVVPCFA LSKNDSYVMS ASGGKISLFN MMTFKTMTTF MAPPPAATSL AFHPQDNNVI
0901: AIGMDDSSIQ IYNVRVDEVK SKLKGHQKRV TGLAFSNVLN VLVSSGADSQ LCVWGMDGWE KQASKQIQIP SGHSPNPLAH TRVQFHQDQT HVLVVHASQL
1001: AIYEAPKLEN VKQWIPTESS GSVTDAVYSC DSQSIYAAFD DGSVSILTAT TLQLKCRIGP SSYLPSNPSL RLYPATIAAH PSEPNQFAVG LTDGGVHVLE
1101: PPGPEGKWGM SPPPENGAGP SVSSAPGSDQ QPR

Best Arabidopsis Sequence Match ( AT3G15880.4 )
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKDTVHRLEK ESGFFFNMRY FEDSVTAGEW DDVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDKKDH AKAVDILVKE
0101: LKVFSTFNEE LFKEITMLLT LTNFRENEQL SKYGDTKSAR GIMLGELKKL IEANPLFRDK LQFPSLKNSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHTCGHPNGA HTPSPTTNHL MGSVPKVGGF PPLGAHGPFQ PTPAPLTTSL AGWMPNPSVQ HPTVSAGPIG LGAPNSAVSM LKRERPRSPP TNSLSMDYQT
0301: ADSESVLKRP RPFGISDGVN NLPVNVLPVT YPGQSHAHAT YSTDDLPKNV SRILSQGSAI KSMDFHPVQQ TMLLVGTNLG DIAIWEVGSR EKLVSRSFKV
0401: WDLATCTVNL QASLASEYTA AVNRVVWSPD GGLLGVAYSK HIVHIYSYHG GEDLRNHLEI DAHAGNVNDL AFSQPNQQLC VVTCGEDKTI KVWDAVTGNK
0501: LHTFEGHEAP VYSVCPHQKE NIQFIFSTAV DGKIKAWLYD NMGSRVDYDA PGRSCTSMAY CADGTRLFSC GTSKEGESFI VEWNESEGAV KRTYLGLGKR
0601: SVGVVQFDTM KNKFLVAGDE FQVKFWDMDS VDLLSSTAAE GGLPSSPCLR INKEGTLLAV STTDNGIKIL ANAEGSRILH SMANRGLDSS RAPPGSVAKG
0701: PIVGTFGTPN SSTGMSLSMG ERSGPVASVT GLNGDNRSLP DVKPRIADDA EKSKTWKLTE ISERSQLRTL RLPDTLLPAR VVKLIYTNSG GAILALAENA
0801: AHKLWKWQKS ERNLLGKANS NVPPQLWQPS SGVLMTNDTR EGNKEDVVPC FALSKNDSYV MSASGGKISL FNMMTFKTMT TFMAPPPAAT SLAFHPQDNN
0901: IIAIGMDDSS IQIYNVRVDE VKSKLKGHQK RVTGLAFSNV LNVLVSSGAD SQLCVWSMDG WEKQASKQIQ IPSGHSPNPL AHTRVQFHQD QIHVLVVHAS
1001: QLAIYEAPKL ENMKQWIPKE SSGSVTDAVY SCDSQSIYAA FDDGSVSILT ATTLQLKCRI GPNSYLPSNP SSRVYPATVA AHPSEPNQFA VGLTDGGVHV
1101: IEPPGPEGKW GISAPPENGA GPSVSSAPGS DQQPR

Arabidopsis Description

WSIP2WUS-interacting protein 2 [Source:TAIR;Acc:AT3G15880]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.