Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX83225 | Canola | cytosol | 94.26 | 96.52 |
| AT2G25420.4 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 71.15 | 72.96 |
| CDY50500 | Canola | cytosol | 16.97 | 25.74 |
| VIT_11s0016g05620.t01 | Wine grape | cytosol | 34.46 | 23.32 |
| KRH20137 | Soybean | endoplasmic reticulum | 33.81 | 22.86 |
| KRH03669 | Soybean | nucleus | 33.81 | 22.84 |
| CDY53312 | Canola | cytosol | 31.98 | 22.35 |
| PGSC0003DMT400079377 | Potato | cytosol | 32.77 | 22.13 |
| CDY21881 | Canola | cytosol | 32.64 | 22.07 |
| CDY20161 | Canola | cytosol | 32.38 | 21.89 |
| CDX75851 | Canola | cytosol | 32.25 | 21.8 |
| CDX82426 | Canola | cytosol | 32.25 | 21.8 |
| CDX81729 | Canola | cytosol | 31.72 | 21.75 |
| CDY33387 | Canola | cytosol | 31.59 | 21.65 |
| CDX67950 | Canola | cytosol | 31.72 | 21.62 |
| CDX79383 | Canola | cytosol | 31.59 | 21.61 |
| CDY36584 | Canola | cytosol | 31.46 | 21.56 |
| Solyc07g008040.2.1 | Tomato | nucleus | 30.16 | 21.06 |
| CDY05552 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 29.37 | 20.25 |
| CDY25010 | Canola | cytosol | 29.37 | 20.23 |
| CDX80607 | Canola | cytosol | 29.37 | 20.14 |
| CDX88252 | Canola | cytosol | 29.11 | 20.11 |
| CDX95900 | Canola | cytosol | 28.72 | 19.37 |
| CDX92100 | Canola | cytosol | 28.59 | 19.35 |
| CDY50502 | Canola | cytosol, plastid | 29.11 | 17.53 |
| CDY67912 | Canola | cytosol | 12.01 | 15.49 |
| CDY04683 | Canola | mitochondrion | 2.35 | 14.52 |
| CDX79301 | Canola | cytosol | 3.66 | 12.9 |
| CDY12727 | Canola | golgi | 4.96 | 10.95 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.1 | GO:A0A078HMB6 | UniProt:A0A078HMB6 | EnsemblPlants:CDY38509 | ProteinID:CDY38509 |
| ProteinID:CDY38509.1 | InterPro:CTLH_C | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00066142001 |
| InterPro:IPR001680 | InterPro:IPR006594 | InterPro:IPR006595 | InterPro:IPR015943 | InterPro:IPR017986 | InterPro:LisH |
| PFAM:PF00400 | PFscan:PS50082 | PFscan:PS50294 | PFscan:PS50896 | PANTHER:PTHR44083 | SMART:SM00320 |
| SMART:SM00667 | SMART:SM00668 | SUPFAM:SSF50978 | InterPro:Topless_fam | UniParc:UPI0004EDFFD4 | InterPro:WD40/YVTN_repeat-like_dom_sf |
| InterPro:WD40_repeat | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | : | : | : |
Description
BnaC03g26880DBnaC03g26880D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HMB6]
Coordinates
chrLK032425:-:39061..43202
Molecular Weight (calculated)
85852.1 Da
IEP (calculated)
7.780
GRAVY (calculated)
-0.170
Length
766 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDSTMILDE TNRKNLIFLI LQFLHEEGYE KSLHLLEQDS GAFFDYSYFS GFITNGKWKD AEDYLSSFTS PDTNTFSRKM FFDLYKWKFS EAPDRSGGSE
101: SANIFSNDLR RIPARINIIL SSPVTIFLNA HLIEIPEKTG SVDKALVRAS LCVDLRKLAE SNPSLCGKLV FPNLNKSALL SLISLICPNS NVRMGGSKED
201: LIRLILQFLH EAKYKNTLHR FEQETKVFFN LNYLAEVMKL GEMGKAEEYL AAFTDKHANI YSKAMFLELQ KLKCFHSDEY CFSYCREATT PSGSLDNTSQ
301: KTKLLASVAM LAKKNPALKD ILSFPKMAKS RLLTLMKQTM DWWRPHSCSN SNSLEHIPVV PYLCGEPSSL KNKLNGTGPR TKVGNCKLKE INHPSECSSL
401: VLPDYWSGER IACLTYSPCG DYILALADDA THKLWTWSTG QNEFCKHTPR VLKEDVFPKP RLHQPMSGKT MKNEIATSVE DSTSCFAIKG SYLFSTSGGK
501: IAVFDLKSFE RVAAFGSPIK PMATYFIFIP VDLLAVGLDD GSILIHCLSS RKIKEKLDGH DQRITCLAFS RCFNVLVSSG ADGKLCVWST KRWLKLTSID
601: SIQNFCTRLN NVSSLVTQIQ FDPYQIELLV VQDKWISRHA APTLDCLRQW VPDESEAAIT SATYSSDGEI ICVGFRSESI KILDSMTFLI KCRINLTAFT
701: QPIPSNIRVK VYPAVVAAHP SHPSQISVGL SNGRVIVLQP LGRGGWGEAD ALEDDRDNSD GLEHCY
101: SANIFSNDLR RIPARINIIL SSPVTIFLNA HLIEIPEKTG SVDKALVRAS LCVDLRKLAE SNPSLCGKLV FPNLNKSALL SLISLICPNS NVRMGGSKED
201: LIRLILQFLH EAKYKNTLHR FEQETKVFFN LNYLAEVMKL GEMGKAEEYL AAFTDKHANI YSKAMFLELQ KLKCFHSDEY CFSYCREATT PSGSLDNTSQ
301: KTKLLASVAM LAKKNPALKD ILSFPKMAKS RLLTLMKQTM DWWRPHSCSN SNSLEHIPVV PYLCGEPSSL KNKLNGTGPR TKVGNCKLKE INHPSECSSL
401: VLPDYWSGER IACLTYSPCG DYILALADDA THKLWTWSTG QNEFCKHTPR VLKEDVFPKP RLHQPMSGKT MKNEIATSVE DSTSCFAIKG SYLFSTSGGK
501: IAVFDLKSFE RVAAFGSPIK PMATYFIFIP VDLLAVGLDD GSILIHCLSS RKIKEKLDGH DQRITCLAFS RCFNVLVSSG ADGKLCVWST KRWLKLTSID
601: SIQNFCTRLN NVSSLVTQIQ FDPYQIELLV VQDKWISRHA APTLDCLRQW VPDESEAAIT SATYSSDGEI ICVGFRSESI KILDSMTFLI KCRINLTAFT
701: QPIPSNIRVK VYPAVVAAHP SHPSQISVGL SNGRVIVLQP LGRGGWGEAD ALEDDRDNSD GLEHCY
001: MILDEKNRKN LVFLILQFFD EEGYEESLHL LEQDSGVFFD FSYLSNAILN GNWKDADDYL SAFTSPEANT FSRKMFFGLF KLKFSEAPDR SGGSEAVKIF
101: SKDLRRIPVL KDDSFDDLVE VIAVDDMRIP EETCCVDKAP GRAKLCVDLH KLAESNPSLR GKLDFPSLNK SALLALISLL CPNCSRRKGG LKEDLICLIL
201: QFLYEAKYKN TLHKLEQETK VFFNLNYLAE VMKLGEYGKA EEYLGAFTNW EDNKYSKAMF LELQKLICLQ STEWEVATPS GSLDNMSLKI KLHASVAMLA
301: KKNPVLKDEL KFPSMEKSRL LTLVKQTMDW WTCNNTSSLE NVPVVSYLCG TPSSMKFFFK KTVPRKKKPN EIKDPSQCNA LVLPDCFSEE KIARLTYSPS
401: GDYILALAED ATHKLWTWSS SQNEFCKYTP KILKENVYPK PRLHQPQSGK TMENEMATSV QKSTSCFAVK GSYLFSTSGG KIAVFDLKNF EKVASFGSPT
501: PMATYFIFIP GDLLAVGLDD GSIFIHCLSS RKVKEKLEGH DQKITCLAFS RCFNVLVSSD SDGKLCLWST KSWVKLTSKN STRKFCNRSN LESTSLVTHI
601: QFDPYQIELL VVHDGWIGLY EVRTLDCRLQ WIPDASDPAI TSATYSSDGE IIYVGFRCGS IKIVDSKTFM TLCQINLTSF TQLSTSNISL EVYPTVVAAH
701: PSHPNQISAG LSNGKVIVLQ PLWSGGWGEA APLEDNGDYS NDSDHSY
101: SKDLRRIPVL KDDSFDDLVE VIAVDDMRIP EETCCVDKAP GRAKLCVDLH KLAESNPSLR GKLDFPSLNK SALLALISLL CPNCSRRKGG LKEDLICLIL
201: QFLYEAKYKN TLHKLEQETK VFFNLNYLAE VMKLGEYGKA EEYLGAFTNW EDNKYSKAMF LELQKLICLQ STEWEVATPS GSLDNMSLKI KLHASVAMLA
301: KKNPVLKDEL KFPSMEKSRL LTLVKQTMDW WTCNNTSSLE NVPVVSYLCG TPSSMKFFFK KTVPRKKKPN EIKDPSQCNA LVLPDCFSEE KIARLTYSPS
401: GDYILALAED ATHKLWTWSS SQNEFCKYTP KILKENVYPK PRLHQPQSGK TMENEMATSV QKSTSCFAVK GSYLFSTSGG KIAVFDLKNF EKVASFGSPT
501: PMATYFIFIP GDLLAVGLDD GSIFIHCLSS RKVKEKLEGH DQKITCLAFS RCFNVLVSSD SDGKLCLWST KSWVKLTSKN STRKFCNRSN LESTSLVTHI
601: QFDPYQIELL VVHDGWIGLY EVRTLDCRLQ WIPDASDPAI TSATYSSDGE IIYVGFRCGS IKIVDSKTFM TLCQINLTSF TQLSTSNISL EVYPTVVAAH
701: PSHPNQISAG LSNGKVIVLQ PLWSGGWGEA APLEDNGDYS NDSDHSY
Arabidopsis Description
transducin family protein / WD-40 repeat family protein [Source:TAIR;Acc:AT2G25420]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,cytosol,plasma membrane,golgi]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,cytosol,plasma membrane,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.