CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82426	Canola	cytosol	99.03	99.03
Bra001613.1-P	Field mustard	cytosol	97.88	98.75
AT3G15880.2	Thale cress	cytosol	94.44	94.11
CDY20161	Canola	cytosol	93.65	93.65
CDY21881	Canola	cytosol	93.03	93.03
VIT_09s0002g07020.t01	Wine grape	cytosol	76.43	76.1
Solyc03g116750.2.1	Tomato	nucleus	75.73	75.8
CDY36584	Canola	cytosol	69.29	70.21
CDX81729	Canola	cytosol	69.2	70.19
CDY53312	Canola	cytosol	67.78	70.07
CDY33387	Canola	cytosol	68.93	69.86
CDX67950	Canola	cytosol	69.2	69.75
CDX79383	Canola	cytosol	68.93	69.73
CDY67912	Canola	cytosol	34.6	65.99
CDX80607	Canola	cytosol	59.75	60.61
CDY05552	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	59.4	60.58
CDY25010	Canola	cytosol	59.31	60.43
CDX88252	Canola	cytosol	58.87	60.14
CDX92100	Canola	cytosol	59.22	59.28
CDX95900	Canola	cytosol	59.05	58.89
CDY50502	Canola	cytosol, plastid	59.05	52.59
CDY50500	Canola	cytosol	22.33	50.1
CDY04683	Canola	mitochondrion	5.12	46.77
CDX83225	Canola	cytosol	21.62	32.75
CDY38509	Canola	cytosol	21.8	32.25
CDX79301	Canola	cytosol	5.83	30.41
CDY12727	Canola	golgi	7.77	25.36

Protein Annotations

MapMan:11.2.2.2	MapMan:15.5.53.1	Gene3D:2.130.10.10	GO:A0A078CF97	EnsemblPlants:CDX75851	ProteinID:CDX75851
ProteinID:CDX75851.1	InterPro:CTLH_C	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00123824001
InterPro:IPR001680	InterPro:IPR006594	InterPro:IPR006595	InterPro:IPR015943	InterPro:IPR017986	InterPro:LisH
PFAM:PF00400	PFscan:PS50082	PFscan:PS50294	PFscan:PS50896	PFscan:PS50897	PANTHER:PTHR44083
PANTHER:PTHR44083:SF1	SMART:SM00320	SMART:SM00667	SMART:SM00668	SUPFAM:SSF50978	InterPro:Topless_fam
UniParc:UPI0004EE7586	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

BnaC03g39340D

Coordinates

chrLK031805:-:1166394..1173395

Molecular Weight (calculated)

123795.0 Da

IEP (calculated)

7.467

GRAVY (calculated)

-0.327

Length

1133 amino acids

Sequence
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKDTVHRLEK ESGFYFNMRY FEDSVTAGEW DDVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDKKDN AKAVEILVKE
0101: LKVFSTFNEE LFKEITMLLT LTNFRENEQL SKYGDTKSAR GIMLGELKKL IEANPLFRDK LQFPTLKNSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFI
0201: DHSCGHPNGS HVASPATNHL MGSAPKVGGF PPLGAHGPFQ PTPAPLTTSL AGWMPNPSVS HPTVSAGPIG LGAPNSAVSM LKHPRTPPTN SLAMDYQTAD
0301: SESVLKRPRP FGISDGVNNL PVNVLPVTYP GQSHSHAAYS TDDLPKNVSR VLSQGSAIKS MDFHPVQQTM LLVGTNVGDI AIWEVGSRDK LVSRSFKVWD
0401: LASCTANLQA SLASEYTAAA NRVVWSPDGG LLGVAYSKHI VHIYSYHGGN DLRNHLEVDA HAGNVNDLAF SLPNQQLCFV TCGEDKTIKV WDAVTGNKLH
0501: TFEGHDAPVY SVCPHQKENI QFIFSTAVDG KIKAWLYDNM GSRVDYDAPG RSCTAMAYCA DGTRLFSCGT SKEGESFIVE WNESEGAVKR TYHGLGKRSV
0601: GVVQFDTMKN KFLVAGDEFQ VKFWDMDSVD LLTTTHADGG LPSSPCLRIN KEGTLLAVST TENGIKILAN AEGSRILHSM ANRGLESSRA PLGSVAKGPI
0701: VGAFGTPSSS TGMSLSMADR SGPGASVTGM NGDNRSLPDV KPRIPDDAEK SKIWKLTEIS ERSHLRTLRL PDSLIQARVV KLIYTNSGSA ILALAENALH
0801: KLWKWQKNER NLLGKANSNI PPQLWQPSSG VVMTNDTREG SKEDVVPCFA LSKNDSYVMS ASGGKISLFN MMTFKTMTTF MAPPPAATSL AFHPQDNNII
0901: AIGMDDSSIQ IYNVRVDEVK SKLKGHQKRV TGLAFSNVLN VLVSSGADSQ LCVWSMDGWE KQASKQIQIP NGHSPNPLAH TRVQFHQDQT HVLVVHASQL
1001: AIYEAPKLES MKQWIPKESS GSVTDAVYSC DSQSIYAAFD DGSVSILTAT TLQLKCRIGP NSYLPSNPSS RVYPATIAAH PSEPNQFAVG LTDGGVHVIE
1101: PPGPEGKWGM SPPPENGAGP SVSAAPGSDQ QPR

Best Arabidopsis Sequence Match ( AT3G15880.4 )
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKDTVHRLEK ESGFFFNMRY FEDSVTAGEW DDVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDKKDH AKAVDILVKE
0101: LKVFSTFNEE LFKEITMLLT LTNFRENEQL SKYGDTKSAR GIMLGELKKL IEANPLFRDK LQFPSLKNSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHTCGHPNGA HTPSPTTNHL MGSVPKVGGF PPLGAHGPFQ PTPAPLTTSL AGWMPNPSVQ HPTVSAGPIG LGAPNSAVSM LKRERPRSPP TNSLSMDYQT
0301: ADSESVLKRP RPFGISDGVN NLPVNVLPVT YPGQSHAHAT YSTDDLPKNV SRILSQGSAI KSMDFHPVQQ TMLLVGTNLG DIAIWEVGSR EKLVSRSFKV
0401: WDLATCTVNL QASLASEYTA AVNRVVWSPD GGLLGVAYSK HIVHIYSYHG GEDLRNHLEI DAHAGNVNDL AFSQPNQQLC VVTCGEDKTI KVWDAVTGNK
0501: LHTFEGHEAP VYSVCPHQKE NIQFIFSTAV DGKIKAWLYD NMGSRVDYDA PGRSCTSMAY CADGTRLFSC GTSKEGESFI VEWNESEGAV KRTYLGLGKR
0601: SVGVVQFDTM KNKFLVAGDE FQVKFWDMDS VDLLSSTAAE GGLPSSPCLR INKEGTLLAV STTDNGIKIL ANAEGSRILH SMANRGLDSS RAPPGSVAKG
0701: PIVGTFGTPN SSTGMSLSMG ERSGPVASVT GLNGDNRSLP DVKPRIADDA EKSKTWKLTE ISERSQLRTL RLPDTLLPAR VVKLIYTNSG GAILALAENA
0801: AHKLWKWQKS ERNLLGKANS NVPPQLWQPS SGVLMTNDTR EGNKEDVVPC FALSKNDSYV MSASGGKISL FNMMTFKTMT TFMAPPPAAT SLAFHPQDNN
0901: IIAIGMDDSS IQIYNVRVDE VKSKLKGHQK RVTGLAFSNV LNVLVSSGAD SQLCVWSMDG WEKQASKQIQ IPSGHSPNPL AHTRVQFHQD QIHVLVVHAS
1001: QLAIYEAPKL ENMKQWIPKE SSGSVTDAVY SCDSQSIYAA FDDGSVSILT ATTLQLKCRI GPNSYLPSNP SSRVYPATVA AHPSEPNQFA VGLTDGGVHV
1101: IEPPGPEGKW GISAPPENGA GPSVSSAPGS DQQPR

Arabidopsis Description

WSIP2WUS-interacting protein 2 [Source:TAIR;Acc:AT3G15880]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.