Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- cytosol 2
- nucleus 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_09s0002g07020.t01 | Wine grape | cytosol | 80.3 | 79.88 |
| CDX82426 | Canola | cytosol | 76.33 | 76.26 |
| Bra001613.1-P | Field mustard | cytosol | 75.53 | 76.14 |
| AT3G15880.2 | Thale cress | cytosol | 76.41 | 76.08 |
| CDY21881 | Canola | cytosol | 76.06 | 75.99 |
| CDY20161 | Canola | cytosol | 75.97 | 75.9 |
| Bra021142.1-P | Field mustard | cytosol | 75.88 | 75.82 |
| CDX75851 | Canola | cytosol | 75.8 | 75.73 |
| Solyc07g008040.2.1 | Tomato | nucleus | 70.49 | 72.74 |
| Solyc03g117360.2.1 | Tomato | nucleus | 72.26 | 72.39 |
| Solyc08g076030.2.1 | Tomato | nucleus | 65.28 | 65.11 |
| Solyc03g117380.2.1 | Tomato | cytosol | 2.12 | 64.86 |
| Solyc01g100050.2.1 | Tomato | nucleus | 63.87 | 63.87 |
| Solyc03g117370.2.1 | Tomato | cytosol | 21.02 | 58.77 |
| Solyc05g016070.1.1 | Tomato | cytosol | 6.54 | 56.49 |
| Solyc03g117410.2.1 | Tomato | cytosol | 6.27 | 49.65 |
| Solyc08g029050.2.1 | Tomato | cytosol | 44.96 | 41.69 |
Protein Annotations
| MapMan:11.2.2.2 | MapMan:15.5.53.1 | Gene3D:2.130.10.10 | InterPro:CTLH_C | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | InterPro:IPR001680 | InterPro:IPR006594 | InterPro:IPR006595 | InterPro:IPR015943 | InterPro:IPR017986 |
| UniProt:K4BLH7 | InterPro:LisH | PFAM:PF00400 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 |
| PFscan:PS50896 | PFscan:PS50897 | PANTHER:PTHR44083 | PANTHER:PTHR44083:SF1 | SMART:SM00320 | SMART:SM00667 |
| SMART:SM00668 | SUPFAM:SSF50978 | EnsemblPlantsGene:Solyc03g116750.2 | EnsemblPlants:Solyc03g116750.2.1 | InterPro:Topless_fam | UniParc:UPI00027690F9 |
| InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg |
Description
Topless-related protein 4 [Source:Projected from Arabidopsis thaliana (AT3G15880) UniProtKB/Swiss-Prot;Acc:Q27GK7]
Coordinates
chr3:-:66029955..66039924
Molecular Weight (calculated)
124325.0 Da
IEP (calculated)
7.025
GRAVY (calculated)
-0.261
Length
1132 amino acids
Sequence
(BLAST)
(BLAST)
0001: MTSLSRELVF LILQFLDEEK FKETVHKLEK ESGFFFNMRY FEDSVTNGEW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDRHDQ AKAVEILVKD
0101: LKVFSTFNEE LFKEITLLLT LQNFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFREK LQFPSLKNSR LRTLINQSLN WQHQLCKNPK PNPDIKTLFV
0201: DHACGQPNGA RAPSPVANPI IGSMPKVGGF PPIGAHGPFQ PAQAPIASLG GWMTNPPSMP HQAISGGPIG LSPPTNAASM LKHPRTPPAS NAALDYQTAD
0301: SEHVLKRPRP FGMSEEVNNL PVNIFPVTYP GQSHAHSLHS SDDLPKTVVV NLNQGSAVKS MDFHPVQQTL LLVGTNIGDI AIWEIGGRER LAFKNFKVWE
0401: IGNCSMTLQA SLANEYTATV NRVMWSPDGN LLGVAYSKHI VHLYSYHGGD DLRNHLEIDA HVGNVSDLAF SHPNKQLCII TCGEDKAIKV WDAATGSKLY
0501: TFEGHEAPVY SVCPHYKESI QFIFATAVDG KIKAWLYDNM GSRVDYDAPG HSCTTMAYSA DGARLFSCGT SKDGESYLVE WNESEGAVKR TYVGLGKRSV
0601: GVVQFDTTKN RFLAAGDEFI IKFWDMDNTN LLTTADADGG LPASPCIRFS KEGTLLAVST SENGVKILAN ADGVRLIRAL ESRALDPSRG PPGAVAKAPM
0701: ISTYGASSST AGTSISIADR TAPVTAIVQL NGDNRNLQDT KPRIPDELEK SKIWKLTEIS EPAQVRSSRL PDNQLSVRII RLMYTNSGGA ILALAYNAVH
0801: KLWKWQRNER NVTGKASTAV PPQLWQPSSG ILMTNDISDT NPEEAVPCFA LSKNDSYVMS ASGGKISLFN MMTFKTMTTF MPPPPAATFL AFHPQDNNII
0901: AIGMEDSSIQ IYNVRVDEVK SKLKGHQKRV TGLAFSSVLN VLVSSGADAQ LCVWSMDGWE KKASKFLQIP SGRAINPLAQ TRVQFHQDQT HLLVVHETQI
1001: AIYEASKLEC VKQWVSPNFA VTDATYSCDS QSIFASFDDG SVSIFTAAAL KLRCRVNPAA YLPSNPSSRV YPLVVAAHPS ESNQCAVGLT DGGVYVLEPL
1101: ESEGKWGTPP PNENGVAPGM SSAATGLDQA SR
0101: LKVFSTFNEE LFKEITLLLT LQNFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFREK LQFPSLKNSR LRTLINQSLN WQHQLCKNPK PNPDIKTLFV
0201: DHACGQPNGA RAPSPVANPI IGSMPKVGGF PPIGAHGPFQ PAQAPIASLG GWMTNPPSMP HQAISGGPIG LSPPTNAASM LKHPRTPPAS NAALDYQTAD
0301: SEHVLKRPRP FGMSEEVNNL PVNIFPVTYP GQSHAHSLHS SDDLPKTVVV NLNQGSAVKS MDFHPVQQTL LLVGTNIGDI AIWEIGGRER LAFKNFKVWE
0401: IGNCSMTLQA SLANEYTATV NRVMWSPDGN LLGVAYSKHI VHLYSYHGGD DLRNHLEIDA HVGNVSDLAF SHPNKQLCII TCGEDKAIKV WDAATGSKLY
0501: TFEGHEAPVY SVCPHYKESI QFIFATAVDG KIKAWLYDNM GSRVDYDAPG HSCTTMAYSA DGARLFSCGT SKDGESYLVE WNESEGAVKR TYVGLGKRSV
0601: GVVQFDTTKN RFLAAGDEFI IKFWDMDNTN LLTTADADGG LPASPCIRFS KEGTLLAVST SENGVKILAN ADGVRLIRAL ESRALDPSRG PPGAVAKAPM
0701: ISTYGASSST AGTSISIADR TAPVTAIVQL NGDNRNLQDT KPRIPDELEK SKIWKLTEIS EPAQVRSSRL PDNQLSVRII RLMYTNSGGA ILALAYNAVH
0801: KLWKWQRNER NVTGKASTAV PPQLWQPSSG ILMTNDISDT NPEEAVPCFA LSKNDSYVMS ASGGKISLFN MMTFKTMTTF MPPPPAATFL AFHPQDNNII
0901: AIGMEDSSIQ IYNVRVDEVK SKLKGHQKRV TGLAFSSVLN VLVSSGADAQ LCVWSMDGWE KKASKFLQIP SGRAINPLAQ TRVQFHQDQT HLLVVHETQI
1001: AIYEASKLEC VKQWVSPNFA VTDATYSCDS QSIFASFDDG SVSIFTAAAL KLRCRVNPAA YLPSNPSSRV YPLVVAAHPS ESNQCAVGLT DGGVYVLEPL
1101: ESEGKWGTPP PNENGVAPGM SSAATGLDQA SR
0001: MSSLSRELVF LILQFLDEEK FKDTVHRLEK ESGFFFNMRY FEDSVTAGEW DDVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDKKDH AKAVDILVKE
0101: LKVFSTFNEE LFKEITMLLT LTNFRENEQL SKYGDTKSAR GIMLGELKKL IEANPLFRDK LQFPSLKNSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHTCGHPNGA HTPSPTTNHL MGSVPKVGGF PPLGAHGPFQ PTPAPLTTSL AGWMPNPSVQ HPTVSAGPIG LGAPNSAVSM LKRERPRSPP TNSLSMDYQT
0301: ADSESVLKRP RPFGISDGVN NLPVNVLPVT YPGQSHAHAT YSTDDLPKNV SRILSQGSAI KSMDFHPVQQ TMLLVGTNLG DIAIWEVGSR EKLVSRSFKV
0401: WDLATCTVNL QASLASEYTA AVNRVVWSPD GGLLGVAYSK HIVHIYSYHG GEDLRNHLEI DAHAGNVNDL AFSQPNQQLC VVTCGEDKTI KVWDAVTGNK
0501: LHTFEGHEAP VYSVCPHQKE NIQFIFSTAV DGKIKAWLYD NMGSRVDYDA PGRSCTSMAY CADGTRLFSC GTSKEGESFI VEWNESEGAV KRTYLGLGKR
0601: SVGVVQFDTM KNKFLVAGDE FQVKFWDMDS VDLLSSTAAE GGLPSSPCLR INKEGTLLAV STTDNGIKIL ANAEGSRILH SMANRGLDSS RAPPGSVAKG
0701: PIVGTFGTPN SSTGMSLSMG ERSGPVASVT GLNGDNRSLP DVKPRIADDA EKSKTWKLTE ISERSQLRTL RLPDTLLPAR VVKLIYTNSG GAILALAENA
0801: AHKLWKWQKS ERNLLGKANS NVPPQLWQPS SGVLMTNDTR EGNKEDVVPC FALSKNDSYV MSASGGKISL FNMMTFKTMT TFMAPPPAAT SLAFHPQDNN
0901: IIAIGMDDSS IQIYNVRVDE VKSKLKGHQK RVTGLAFSNV LNVLVSSGAD SQLCVWSMDG WEKQASKQIQ IPSGHSPNPL AHTRVQFHQD QIHVLVVHAS
1001: QLAIYEAPKL ENMKQWIPKE SSGSVTDAVY SCDSQSIYAA FDDGSVSILT ATTLQLKCRI GPNSYLPSNP SSRVYPATVA AHPSEPNQFA VGLTDGGVHV
1101: IEPPGPEGKW GISAPPENGA GPSVSSAPGS DQQPR
0101: LKVFSTFNEE LFKEITMLLT LTNFRENEQL SKYGDTKSAR GIMLGELKKL IEANPLFRDK LQFPSLKNSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHTCGHPNGA HTPSPTTNHL MGSVPKVGGF PPLGAHGPFQ PTPAPLTTSL AGWMPNPSVQ HPTVSAGPIG LGAPNSAVSM LKRERPRSPP TNSLSMDYQT
0301: ADSESVLKRP RPFGISDGVN NLPVNVLPVT YPGQSHAHAT YSTDDLPKNV SRILSQGSAI KSMDFHPVQQ TMLLVGTNLG DIAIWEVGSR EKLVSRSFKV
0401: WDLATCTVNL QASLASEYTA AVNRVVWSPD GGLLGVAYSK HIVHIYSYHG GEDLRNHLEI DAHAGNVNDL AFSQPNQQLC VVTCGEDKTI KVWDAVTGNK
0501: LHTFEGHEAP VYSVCPHQKE NIQFIFSTAV DGKIKAWLYD NMGSRVDYDA PGRSCTSMAY CADGTRLFSC GTSKEGESFI VEWNESEGAV KRTYLGLGKR
0601: SVGVVQFDTM KNKFLVAGDE FQVKFWDMDS VDLLSSTAAE GGLPSSPCLR INKEGTLLAV STTDNGIKIL ANAEGSRILH SMANRGLDSS RAPPGSVAKG
0701: PIVGTFGTPN SSTGMSLSMG ERSGPVASVT GLNGDNRSLP DVKPRIADDA EKSKTWKLTE ISERSQLRTL RLPDTLLPAR VVKLIYTNSG GAILALAENA
0801: AHKLWKWQKS ERNLLGKANS NVPPQLWQPS SGVLMTNDTR EGNKEDVVPC FALSKNDSYV MSASGGKISL FNMMTFKTMT TFMAPPPAAT SLAFHPQDNN
0901: IIAIGMDDSS IQIYNVRVDE VKSKLKGHQK RVTGLAFSNV LNVLVSSGAD SQLCVWSMDG WEKQASKQIQ IPSGHSPNPL AHTRVQFHQD QIHVLVVHAS
1001: QLAIYEAPKL ENMKQWIPKE SSGSVTDAVY SCDSQSIYAA FDDGSVSILT ATTLQLKCRI GPNSYLPSNP SSRVYPATVA AHPSEPNQFA VGLTDGGVHV
1101: IEPPGPEGKW GISAPPENGA GPSVSSAPGS DQQPR
Arabidopsis Description
WSIP2WUS-interacting protein 2 [Source:TAIR;Acc:AT3G15880]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.