Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- cytosol 2
- nucleus 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH44501 | Soybean | cytosol | 86.73 | 86.5 |
| KRH47407 | Soybean | cytosol | 86.19 | 86.19 |
| KRH23604 | Soybean | endoplasmic reticulum | 86.28 | 86.13 |
| VIT_09s0002g08370.t01 | Wine grape | cytosol | 85.93 | 85.33 |
| KRH09700 | Soybean | cytosol | 84.42 | 84.42 |
| AT1G15750.3 | Thale cress | cytosol | 82.83 | 82.76 |
| CDX81729 | Canola | cytosol | 81.68 | 82.63 |
| Bra003569.1-P | Field mustard | cytosol | 79.56 | 82.55 |
| AT1G80490.2 | Thale cress | cytosol | 81.77 | 82.5 |
| CDY53312 | Canola | cytosol | 79.73 | 82.21 |
| Bra026751.1-P | Field mustard | cytosol | 82.12 | 82.12 |
| CDY36584 | Canola | cytosol | 81.24 | 82.11 |
| CDX67950 | Canola | cytosol | 81.59 | 82.03 |
| CDY33387 | Canola | cytosol | 81.06 | 81.93 |
| Bra026112.1-P | Field mustard | cytosol | 81.15 | 81.88 |
| CDX79383 | Canola | cytosol | 80.97 | 81.7 |
| Solyc03g117370.2.1 | Tomato | cytosol | 27.43 | 76.54 |
| Solyc03g116750.2.1 | Tomato | nucleus | 72.39 | 72.26 |
| Solyc07g008040.2.1 | Tomato | nucleus | 67.35 | 69.37 |
| Solyc08g076030.2.1 | Tomato | nucleus | 68.14 | 67.84 |
| Solyc03g117380.2.1 | Tomato | cytosol | 2.21 | 67.57 |
| Solyc01g100050.2.1 | Tomato | nucleus | 62.74 | 62.63 |
| Solyc05g016070.1.1 | Tomato | cytosol | 6.81 | 58.78 |
| Solyc03g117410.2.1 | Tomato | cytosol | 6.81 | 53.85 |
| Zm00001d050983_P001 | Maize | cytosol | 11.33 | 51.2 |
| Zm00001d004623_P001 | Maize | cytosol, plastid | 11.06 | 46.3 |
| Solyc08g029050.2.1 | Tomato | cytosol | 46.99 | 43.49 |
| Zm00001d027915_P001 | Maize | cytosol | 11.42 | 41.61 |
| Zm00001d045829_P001 | Maize | mitochondrion | 11.06 | 38.34 |
| Zm00001d052868_P001 | Maize | cytosol, peroxisome, plasma membrane | 7.35 | 35.17 |
Protein Annotations
| MapMan:11.2.2.2 | MapMan:15.5.53.1 | Gene3D:2.130.10.10 | InterPro:CTLH_C | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001680 | InterPro:IPR006594 | InterPro:IPR006595 | InterPro:IPR015943 |
| InterPro:IPR017986 | UniProt:K4BLN8 | EMBL:KY348751 | InterPro:LisH | PFAM:PF00400 | ScanProsite:PS00678 |
| PFscan:PS50082 | PFscan:PS50294 | PFscan:PS50896 | PFscan:PS50897 | PANTHER:PTHR44083 | PANTHER:PTHR44083:SF2 |
| SMART:SM00320 | SMART:SM00667 | SMART:SM00668 | SUPFAM:SSF50978 | EnsemblPlantsGene:Solyc03g117360.2 | EnsemblPlants:Solyc03g117360.2.1 |
| InterPro:Topless_fam | UniParc:UPI000276769F | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom |
| InterPro:WD40_repeat_dom_sf | SEG:seg | : | : | : | : |
Description
TOPLESS [Source:UniProtKB/TrEMBL;Acc:K4BLN8]
Coordinates
chr3:+:66520643..66530976
Molecular Weight (calculated)
124684.0 Da
IEP (calculated)
7.212
GRAVY (calculated)
-0.354
Length
1130 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEDEVHNGNW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDKRDR SKGVEILVKD
0101: LKVFASFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPNLKNSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCGQPNGA RAPSPANNPL LGSVPKPGSF PPLGAHGPFQ PGPAPVAAPL AGWMSNPPTV AHPAVSGGPM GLGPSSIPAS LKHPRTPPTN PSIDYPSGES
0301: DHAAKRTRSL GISDEVNLPV NVLPISFPGQ GHNQSLTVPD DLPKTVARTL NQGSSPMSMD FHPSQQTLLL VGTNVGDIAL WEVGSRERLV LRNFKVWDLS
0401: ACSMPLQTAL VKDPGVSVNR VIWSPDGSLF GVAYSRHIVQ IYSYHGNDDI RQHVEIDAHV GGVNDLAFSH PNKQLSVITC GDDKTIKVWD ATSGARQYTF
0501: EGHEAPVYSV CPHHKETIQF IFSTALDGKI KAWLYDNLGS RVDYEAPGRW CTTMAYSADG TRLFSCGTSK DGESHIVEWN ESEGAVKRTY QGFRKRSLGV
0601: VQFDTTKNRF LAAGDDFSIK FWDMDHVPLL TSIDADGGLP ASPRIRFNKD GSLLAVSANE NGIKILANND GIRLIRTFEN LAYDASRASE TTKPTVNPIS
0701: VASANNSGFA DRVASVVGIS GMNGDARNPV DVKPRINEEP NDKSKIWKLT EISESSQCRS LKLPENLRVT KISRLIYTNS GNAVLALASN AIHLLWKWQR
0801: NERNTSGKAT ASVSPQLWQP SSGILMTNDV HEPNHEEAVS CFALSKNDSY VMSASGGKIS LFNMMTFKTM TTFMPPPPAA TFLAFHPQDN NIIAIGMDDS
0901: TIQIYNVRVD EVKSKLKGHS KRITGLAFSH VLNVLVSSGA DSQLCVWSTD GWEKQRARTL QLPGRSTSQS DTRVQFHQDQ THFLAVHEAQ IAIFETTKLE
1001: CLKQWVPRES AAPISHATFS CDSQLIYASF LDATVCVFTA GHLHMRCRII PSAYLSPSIS NSNIHPVVVA AHPQDPNQFA LGLSDGSVHV FEPLESEGKW
1101: GVPPPLENGS TNGMPTAPSI GASGSDQAPR
0101: LKVFASFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPNLKNSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCGQPNGA RAPSPANNPL LGSVPKPGSF PPLGAHGPFQ PGPAPVAAPL AGWMSNPPTV AHPAVSGGPM GLGPSSIPAS LKHPRTPPTN PSIDYPSGES
0301: DHAAKRTRSL GISDEVNLPV NVLPISFPGQ GHNQSLTVPD DLPKTVARTL NQGSSPMSMD FHPSQQTLLL VGTNVGDIAL WEVGSRERLV LRNFKVWDLS
0401: ACSMPLQTAL VKDPGVSVNR VIWSPDGSLF GVAYSRHIVQ IYSYHGNDDI RQHVEIDAHV GGVNDLAFSH PNKQLSVITC GDDKTIKVWD ATSGARQYTF
0501: EGHEAPVYSV CPHHKETIQF IFSTALDGKI KAWLYDNLGS RVDYEAPGRW CTTMAYSADG TRLFSCGTSK DGESHIVEWN ESEGAVKRTY QGFRKRSLGV
0601: VQFDTTKNRF LAAGDDFSIK FWDMDHVPLL TSIDADGGLP ASPRIRFNKD GSLLAVSANE NGIKILANND GIRLIRTFEN LAYDASRASE TTKPTVNPIS
0701: VASANNSGFA DRVASVVGIS GMNGDARNPV DVKPRINEEP NDKSKIWKLT EISESSQCRS LKLPENLRVT KISRLIYTNS GNAVLALASN AIHLLWKWQR
0801: NERNTSGKAT ASVSPQLWQP SSGILMTNDV HEPNHEEAVS CFALSKNDSY VMSASGGKIS LFNMMTFKTM TTFMPPPPAA TFLAFHPQDN NIIAIGMDDS
0901: TIQIYNVRVD EVKSKLKGHS KRITGLAFSH VLNVLVSSGA DSQLCVWSTD GWEKQRARTL QLPGRSTSQS DTRVQFHQDQ THFLAVHEAQ IAIFETTKLE
1001: CLKQWVPRES AAPISHATFS CDSQLIYASF LDATVCVFTA GHLHMRCRII PSAYLSPSIS NSNIHPVVVA AHPQDPNQFA LGLSDGSVHV FEPLESEGKW
1101: GVPPPLENGS TNGMPTAPSI GASGSDQAPR
0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEDEVHNGNW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDKHDR PKAVDILVKD
0101: LKVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPTLRNSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCGPPNGA RAPSPVNNPL LGGIPKAGGF PPLGAHGPFQ PTASPVPTPL AGWMSSPSSV PHPAVSAGAI ALGGPSIPAA LKHPRTPPTN ASLDYPSADS
0301: EHVSKRTRPM GISDEVNLGV NMLPMSFSGQ AHGHSPAFKA PDDLPKTVAR TLSQGSSPMS MDFHPIKQTL LLVGTNVGDI GLWEVGSRER LVQKTFKVWD
0401: LSKCSMPLQA ALVKEPVVSV NRVIWSPDGS LFGVAYSRHI VQLYSYHGGE DMRQHLEIDA HVGGVNDISF STPNKQLCVI TCGDDKTIKV WDAATGVKRH
0501: TFEGHEAPVY SVCPHYKENI QFIFSTALDG KIKAWLYDNM GSRVDYDAPG RWCTTMAYSA DGTRLFSCGT SKDGESFIVE WNESEGAVKR TYQGFHKRSL
0601: GVVQFDTTKN RYLAAGDDFS IKFWDMDAVQ LLTAIDGDGG LQASPRIRFN KEGSLLAVSG NENVIKIMAN SDGLRLLHTF ENISSESSKP AINSIAAAAA
0701: AAATSAGHAD RSANVVSIQG MNGDSRNMVD VKPVITEESN DKSKIWKLTE VSEPSQCRSL RLPENLRVAK ISRLIFTNSG NAILALASNA IHLLWKWQRN
0801: ERNATGKATA SLPPQQWQPA SGILMTNDVA ETNPEEAVPC FALSKNDSYV MSASGGKISL FNMMTFKTMA TFMPPPPAAT FLAFHPQDNN IIAIGMDDST
0901: IQIYNVRVDE VKSKLKGHSK RITGLAFSNV LNVLVSSGAD AQLCVWNTDG WEKQRSKVLP LPQGRPNSAP SDTRVQFHQD QAHFLVVHET QLAIYETTKL
1001: ECMKQWAVRE SLAPITHATF SCDSQLVYAS FMDATVCVFS SANLRLRCRV NPSAYLPASL SNSNVHPLVI AAHPQEPNMF AVGLSDGGVH IFEPLESEGK
1101: WGVAPPAENG SASGAPTAPS VGASASDQPQ R
0101: LKVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPTLRNSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCGPPNGA RAPSPVNNPL LGGIPKAGGF PPLGAHGPFQ PTASPVPTPL AGWMSSPSSV PHPAVSAGAI ALGGPSIPAA LKHPRTPPTN ASLDYPSADS
0301: EHVSKRTRPM GISDEVNLGV NMLPMSFSGQ AHGHSPAFKA PDDLPKTVAR TLSQGSSPMS MDFHPIKQTL LLVGTNVGDI GLWEVGSRER LVQKTFKVWD
0401: LSKCSMPLQA ALVKEPVVSV NRVIWSPDGS LFGVAYSRHI VQLYSYHGGE DMRQHLEIDA HVGGVNDISF STPNKQLCVI TCGDDKTIKV WDAATGVKRH
0501: TFEGHEAPVY SVCPHYKENI QFIFSTALDG KIKAWLYDNM GSRVDYDAPG RWCTTMAYSA DGTRLFSCGT SKDGESFIVE WNESEGAVKR TYQGFHKRSL
0601: GVVQFDTTKN RYLAAGDDFS IKFWDMDAVQ LLTAIDGDGG LQASPRIRFN KEGSLLAVSG NENVIKIMAN SDGLRLLHTF ENISSESSKP AINSIAAAAA
0701: AAATSAGHAD RSANVVSIQG MNGDSRNMVD VKPVITEESN DKSKIWKLTE VSEPSQCRSL RLPENLRVAK ISRLIFTNSG NAILALASNA IHLLWKWQRN
0801: ERNATGKATA SLPPQQWQPA SGILMTNDVA ETNPEEAVPC FALSKNDSYV MSASGGKISL FNMMTFKTMA TFMPPPPAAT FLAFHPQDNN IIAIGMDDST
0901: IQIYNVRVDE VKSKLKGHSK RITGLAFSNV LNVLVSSGAD AQLCVWNTDG WEKQRSKVLP LPQGRPNSAP SDTRVQFHQD QAHFLVVHET QLAIYETTKL
1001: ECMKQWAVRE SLAPITHATF SCDSQLVYAS FMDATVCVFS SANLRLRCRV NPSAYLPASL SNSNVHPLVI AAHPQEPNMF AVGLSDGGVH IFEPLESEGK
1101: WGVAPPAENG SASGAPTAPS VGASASDQPQ R
Arabidopsis Description
TPLProtein TOPLESS [Source:UniProtKB/Swiss-Prot;Acc:Q94AI7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.