Factsheet for Bra003569.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67950	Canola	cytosol	99.91	96.8
CDX79383	Canola	cytosol	99.54	96.79
AT1G80490.2	Thale cress	cytosol	96.05	93.39
Bra026112.1-P	Field mustard	cytosol	92.93	90.36
Bra026751.1-P	Field mustard	cytosol	93.2	89.82
KRH23604	Soybean	endoplasmic reticulum	85.4	82.16
KRH44501	Soybean	cytosol	84.85	81.55
KRH47407	Soybean	cytosol	84.57	81.5
VIT_09s0002g08370.t01	Wine grape	cytosol	85.12	81.46
KRH09700	Soybean	cytosol	83.38	80.35
Solyc03g117360.2.1	Tomato	nucleus	82.55	79.56
GSMUA_Achr4P09920_001	Banana	cytosol	80.17	75.91
EER92538	Sorghum	cytosol	78.33	75.82
Os03t0254700-01	Rice	cytosol	78.33	75.29
TraesCS4D01G221200.1	Wheat	cytosol	78.33	75.22
HORVU0Hr1G008690.1	Barley	cytosol, endoplasmic reticulum	78.42	75.18
TraesCS4A01G083300.2	Wheat	cytosol	78.24	75.07
TraesCS4B01G220900.3	Wheat	cytosol	77.96	74.74
GSMUA_Achr6P36440_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	78.88	74.44
GSMUA_Achr6P22950_001	Banana	plasma membrane	78.88	69.39
Bra001613.1-P	Field mustard	cytosol	69.79	67.68
Bra021142.1-P	Field mustard	cytosol	69.88	67.17
Bra020567.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	61.25	62.57
Bra009930.1-P	Field mustard	cytosol	60.33	60.89
Bra022181.1-P	Field mustard	cytosol	63.09	60.69
Bra028653.1-P	Field mustard	mitochondrion	65.47	58.3
Bra006005.1-P	Field mustard	cytosol	55.28	56.05
Bra021203.1-P	Field mustard	cytosol	62.72	54.42
Zm00001d050983_P001	Maize	cytosol	11.57	50.4
Bra006006.1-P	Field mustard	cytosol	44.81	49.85
Zm00001d004623_P001	Maize	cytosol, plastid	11.57	46.67
Zm00001d027915_P001	Maize	cytosol	11.85	41.61
Zm00001d045829_P001	Maize	mitochondrion	11.39	38.04
Zm00001d052868_P001	Maize	cytosol, peroxisome, plasma membrane	7.53	34.75
Bra000550.1-P	Field mustard	cytosol	17.26	30.57

Protein Annotations

MapMan:11.2.2.2	MapMan:15.5.53.1	Gene3D:2.130.10.10	EnsemblPlantsGene:Bra003569	EnsemblPlants:Bra003569.1	EnsemblPlants:Bra003569.1-P
InterPro:CTLH_C	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009790
GO:GO:0009791	GO:GO:0009987	GO:GO:0010072	InterPro:IPR001680	InterPro:IPR006594	InterPro:IPR006595
InterPro:IPR015943	InterPro:IPR017986	InterPro:LisH	UniProt:M4CH86	PFAM:PF00400	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PFscan:PS50896	PFscan:PS50897	PANTHER:PTHR44083	PANTHER:PTHR44083:SF2
InterPro:Quinoprotein_ADH-like_supfam	SMART:SM00320	SMART:SM00667	SMART:SM00668	SUPFAM:SSF50978	SUPFAM:SSF50998
InterPro:Topless_fam	UniParc:UPI0002541300	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

AT1G80490 (E=0.0) TPR1 | TPR1 (TOPLESS-RELATED 1)

Coordinates

chrA07:-:13832625..13837880

Molecular Weight (calculated)

121049.0 Da

IEP (calculated)

7.329

GRAVY (calculated)

-0.316

Length

1089 amino acids

Sequence
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEDEVHSGNW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDKHDR PKAVEILVKD
0101: LRVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR SIMLVELKKL IEANPLFRDK LQFPTLRNSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCRLPNDA RAPSPVNNPL LGSLPKAGGF PPLGAHGPFQ PTPSQVPTPL AGWMSSSSSV PHPAVSGGAI ALGSPSIQAA LKHPRTPPSN SAVEYPSGDS
0301: EHVSKRTRPM GISDEVNLGV NMLPMTFPGQ AHGHTQAFKA PDDLPKTVAR TLSQGSSPMS MDFHPIKQTL LLVGTNVGDI GLWEVGSRER LVQKTFKVWD
0401: LSKCSMPLQA ALVKEPVVSV NRVIWSPDGS LFGVAYSRHI VQLYSYHGGE DMRQHLEIDA HVGGVNDIAF STPNKQLCFT TCGDDKTIKV WDAATGVKRH
0501: TFEGHEAPVY SICPHYKENI QFIFSTALDG KIKAWLYDNM GSRVDYEAPG RWCTTMAYSA DGTRLFSCGT SKDGDSYIVE WNESEGAVKR TYQGFHKRSL
0601: GVVQFDTTKN RYLAAGDDFS IKFWDMDNVQ LLTAIDADGG LQASPRIRFN KEGSLLAVSA NDNMIKVMAN TDGLRLLHTV DNLSSESSKP AINNIAVAER
0701: AAERPASVVS IPGMNGDSRN MVDVKPVITE ESNDKSKIWK LTEVGEPSQC RSLRLPENMR VTKISRLIFT NSGNAILALA SNAIHLLWKW QRNDRNATGK
0801: ATASLPPQQW QPASGILMTN DVTEANSEEA VPCFALSKND SYVMSASGGK ISLFNMMTFK TMATFMPPPP AATFLAFHPQ DNNIIAIGMD DSTIQIYNVR
0901: VDEVKSKLKG HSKRITGLAF SNVLNVLVSS GADAQLCVWN TDGWEKQRSK VLQVPQGRST GALSDTRVQF HQDQVHFLVV HETQLAIYET TKLECMKQWP
1001: VRESSAPITH ATFSCDSQLI YASFMDATIC VFTSANLRLR CRVNPSAYLP ASLSNSNVHP LVIAAHPQES NMFAVGLSDG GVHIFEPLE

Best Arabidopsis Sequence Match ( AT1G80490.3 )
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEDEVHNGNW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDRHDR PKAVDILVKD
0101: LKVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPTLRTSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCRLPNDA RAPSPVNNPL LGSLPKAEGF PPLGAHGPFQ PTPSPVPTPL AGWMSSPSSV PHPAVSGGPI ALGAPSIQAA LKHPRTPPSN SAVDYPSGDS
0301: DHVSKRTRPM GISDEVSLGV NMLPMTFPGQ AHGHNQTFKA PDDLPKTVAR TLSQGSSPMS MDFHPIKQTL LLVGTNVGDI GLWEVGSRER LVQKTFKVWD
0401: LSKCSMPLQA ALVKEPVVSV NRVIWSPDGS LFGVAYSRHI VQLYSYHGGE DMRQHLEIDA HVGGVNDIAF STPNKQLCVT TCGDDKTIKV WDAATGVKRY
0501: TFEGHEAPVY SICPHYKENI QFIFSTALDG KIKAWLYDNM GSRVDYEAPG RWCTTMAYSA DGTRLFSCGT SKDGESFIVE WNESEGAVKR TYQGFHKRSL
0601: GVVQFDTTKN RYLAAGDDFS IKFWDMDTIQ LLTAIDADGG LQASPRIRFN KEGSLLAVSA NDNMIKVMAN SDGLRLLHTV ENLSSESSKP AINSIPMVER
0701: PASVVSIPGM NGDSRNMVDV KPVITEESND KSKVWKLTEV GEPSQCRSLR LPENMRVTKI SRLIFTNSGN AILALASNAI HLLWKWQRND RNATGKATAS
0801: LPPQQWQPAS GILMTNDVAE TNPEEAVPCF ALSKNDSYVM SASGGKISLF NMMTFKTMAT FMPPPPAATF LAFHPQDNNI IAIGMDDSTI QIYNVRVDEV
0901: KSKLKGHSKR ITGLAFSNVL NVLVSSGADA QLCVWNTDGW EKQKSKVLQI PQGRSTSSLS DTRVQFHQDQ VHFLVVHETQ LAIYETTKLE CMKQWPVRES
1001: AAPITHATFS CDSQLIYTSF MDATICVFSS ANLRLRCRVN PSAYLPASLS NSNVHPLVIA AHPQESNMFA VGLSDGGVHI FEPLESEGKW GVAPPPENGS
1101: ASAVTATPSV GASASDQPQR

Arabidopsis Description

TPR1Topless-related protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WV90]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.