Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra006005.1-P | Field mustard | cytosol | 72.11 | 65.74 |
| Bra028653.1-P | Field mustard | mitochondrion | 68.23 | 54.62 |
| KRH03669 | Soybean | nucleus | 56.18 | 48.5 |
| VIT_11s0016g05620.t01 | Wine grape | cytosol | 56.08 | 48.5 |
| KRH20137 | Soybean | endoplasmic reticulum | 55.87 | 48.28 |
| Solyc07g008040.2.1 | Tomato | nucleus | 53.22 | 47.49 |
| PGSC0003DMT400079377 | Potato | cytosol | 53.93 | 46.56 |
| Bra003569.1-P | Field mustard | cytosol | 49.85 | 44.81 |
| Bra001613.1-P | Field mustard | cytosol | 51.28 | 44.7 |
| Bra021142.1-P | Field mustard | cytosol | 51.69 | 44.66 |
| Bra026751.1-P | Field mustard | cytosol | 50.77 | 43.98 |
| Bra026112.1-P | Field mustard | cytosol | 50.26 | 43.93 |
| Bra020567.1-P | Field mustard | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 45.86 | 42.12 |
| Bra009930.1-P | Field mustard | cytosol | 45.35 | 41.15 |
| Bra022181.1-P | Field mustard | cytosol | 46.99 | 40.64 |
| Bra021203.1-P | Field mustard | cytosol | 46.27 | 36.1 |
| Bra000550.1-P | Field mustard | cytosol | 16.45 | 26.18 |
Protein Annotations
| MapMan:15.3.6.3.1 | Gene3D:2.130.10.10 | Gene3D:3.30.40.210 | EnsemblPlantsGene:Bra006006 | EnsemblPlants:Bra006006.1 | EnsemblPlants:Bra006006.1-P |
| InterPro:CTLH_C | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001680 | InterPro:IPR006595 |
| InterPro:IPR015943 | InterPro:IPR017986 | InterPro:IPR038510 | UniProt:M4CP68 | PFAM:PF00400 | PFscan:PS50082 |
| PFscan:PS50294 | PFscan:PS50897 | PANTHER:PTHR44083 | PANTHER:PTHR44083:SF4 | InterPro:Quino_amine_DH_bsu | InterPro:Quinoprotein_ADH-like_supfam |
| SMART:SM00320 | SMART:SM00668 | SUPFAM:SSF50969 | SUPFAM:SSF50998 | InterPro:Spt4_sf | InterPro:Topless_fam |
| UniParc:UPI000253F7B7 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom | SEG:seg | : |
Description
AT1G80490 (E=3e-187) TPR1 | TPR1 (TOPLESS-RELATED 1)
Coordinates
chrA03:+:1587064..1593449
Molecular Weight (calculated)
107982.0 Da
IEP (calculated)
7.061
GRAVY (calculated)
-0.261
Length
979 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEVASQIPA SFGHELRARL RCRLVKTYDQ IMDSGCENRH FFKGEEVPEL IVDVTTLNFN GSSPTTATEE ETKTNSLYYS LLLLLAFPDS SIGETFSHLN
101: LRRLESESGC YFNMRYFEEL VAQGKWDEME KYLFGFTKIG DNQQSMMIFF EIRKHKYLEA LDKRDHAKAL DILRKDLKVF ELETYNKDLF KEMSLLLTMD
201: DFRANPKIST YGDTTSERGN LFRGIEKLIV ANPLLRDKLQ FPVLGTSRLR TLIGQSLKWQ HHLCKNPMPN PDIDTLFVDH TCDQPIAVGN ISPVPYSGQP
301: HGRNTISLDE FPKVVVTTLA QGSPVTSMDF HPFQQILLLV GTIGGDVFLW DVVARQMISE KGFEVWKLYA CSDELQGHEA PVLSVCPDQK KIIQVILSTA
401: TDGKIKGWSY DDVGASVTYD APGHSSTRMA FSSDRARLFS CGTNKEGESF LVEWKDGKGS IKRTYQGLGQ RAVGIVQFDT TKNRFLAAGD ESTIKIWDMN
501: NTNLLKTIHA DGGLPASPCV RFNKEGTLLA VSTSNHGVRI LATDDGLKFL KTAENRTLVT KVPGGGGGGF GSSSANAGIT MADQSTSCAA MKKNEVRTLP
601: LGKPRTSNVS NEGSTTWKVT EITEPSQCYS LILPDKVTDT KVSRLIYTNS GSGVLALASN AEHKLWKWQK SDPNLDGKAT TNAHPVLWRP NSGIIMINKT
701: SDTNPEEAIP CLALSKNDSY LVSASGREIS LFKMATFETA ATYMSPPPAA TFLAFLPSDY NIIGIGFKDS SIRIYNLQTD EGKAILLNGH TKRITGLAFS
801: LALNILVSSG ADSQVCVWSM AGWEKRSSMY LNAPKGRSMP AVSDTRVQFH QNEIHLLVVN ETQIAIYDAQ KLDCLNTWFL REATGRRITS GTYSGDSKSI
901: FVGFEDGTVN VLTASNLRLR CRINPTAYLP SNPSLRVLVI AAHPSESDQF AVGLSNGHVC VVEPSESEGR WGTSPPGST
101: LRRLESESGC YFNMRYFEEL VAQGKWDEME KYLFGFTKIG DNQQSMMIFF EIRKHKYLEA LDKRDHAKAL DILRKDLKVF ELETYNKDLF KEMSLLLTMD
201: DFRANPKIST YGDTTSERGN LFRGIEKLIV ANPLLRDKLQ FPVLGTSRLR TLIGQSLKWQ HHLCKNPMPN PDIDTLFVDH TCDQPIAVGN ISPVPYSGQP
301: HGRNTISLDE FPKVVVTTLA QGSPVTSMDF HPFQQILLLV GTIGGDVFLW DVVARQMISE KGFEVWKLYA CSDELQGHEA PVLSVCPDQK KIIQVILSTA
401: TDGKIKGWSY DDVGASVTYD APGHSSTRMA FSSDRARLFS CGTNKEGESF LVEWKDGKGS IKRTYQGLGQ RAVGIVQFDT TKNRFLAAGD ESTIKIWDMN
501: NTNLLKTIHA DGGLPASPCV RFNKEGTLLA VSTSNHGVRI LATDDGLKFL KTAENRTLVT KVPGGGGGGF GSSSANAGIT MADQSTSCAA MKKNEVRTLP
601: LGKPRTSNVS NEGSTTWKVT EITEPSQCYS LILPDKVTDT KVSRLIYTNS GSGVLALASN AEHKLWKWQK SDPNLDGKAT TNAHPVLWRP NSGIIMINKT
701: SDTNPEEAIP CLALSKNDSY LVSASGREIS LFKMATFETA ATYMSPPPAA TFLAFLPSDY NIIGIGFKDS SIRIYNLQTD EGKAILLNGH TKRITGLAFS
801: LALNILVSSG ADSQVCVWSM AGWEKRSSMY LNAPKGRSMP AVSDTRVQFH QNEIHLLVVN ETQIAIYDAQ KLDCLNTWFL REATGRRITS GTYSGDSKSI
901: FVGFEDGTVN VLTASNLRLR CRINPTAYLP SNPSLRVLVI AAHPSESDQF AVGLSNGHVC VVEPSESEGR WGTSPPGST
0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEDEVHNGNW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDRHDR PKAVDILVKD
0101: LKVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPTLRTSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCRLPNDA RAPSPVNNPL LGSLPKAEGF PPLGAHGPFQ PTPSPVPTPL AGWMSSPSSV PHPAVSGGPI ALGAPSIQAA LKHPRTPPSN SAVDYPSGDS
0301: DHVSKRTRPM GISDEVSLGV NMLPMTFPGQ AHGHNQTFKA PDDLPKTVAR TLSQGSSPMS MDFHPIKQTL LLVGTNVGDI GLWEVGSRER LVQKTFKVWD
0401: LSKCSMPLQA ALVKEPVVSV NRVIWSPDGS LFGVAYSRHI VQLYSYHGGE DMRQHLEIDA HVGGVNDIAF STPNKQLCVT TCGDDKTIKV WDAATGVKRY
0501: TFEGHEAPVY SICPHYKENI QFIFSTALDG KIKAWLYDNM GSRVDYEAPG RWCTTMAYSA DGTRLFSCGT SKDGESFIVE WNESEGAVKR TYQGFHKRSL
0601: GVVQFDTTKN RYLAAGDDFS IKFWDMDTIQ LLTAIDADGG LQASPRIRFN KEGSLLAVSA NDNMIKVMAN SDGLRLLHTV ENLSSESSKP AINSIPMVER
0701: PASVVSIPGM NGDSRNMVDV KPVITEESND KSKVWKLTEV GEPSQCRSLR LPENMRVTKI SRLIFTNSGN AILALASNAI HLLWKWQRND RNATGKATAS
0801: LPPQQWQPAS GILMTNDVAE TNPEEAVPCF ALSKNDSYVM SASGGKISLF NMMTFKTMAT FMPPPPAATF LAFHPQDNNI IAIGMDDSTI QIYNVRVDEV
0901: KSKLKGHSKR ITGLAFSNVL NVLVSSGADA QLCVWNTDGW EKQKSKVLQI PQGRSTSSLS DTRVQFHQDQ VHFLVVHETQ LAIYETTKLE CMKQWPVRES
1001: AAPITHATFS CDSQLIYTSF MDATICVFSS ANLRLRCRVN PSAYLPASLS NSNVHPLVIA AHPQESNMFA VGLSDGGVHI FEPLESEGKW GVAPPPENGS
1101: ASAVTATPSV GASASDQPQR
0101: LKVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPTLRTSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCRLPNDA RAPSPVNNPL LGSLPKAEGF PPLGAHGPFQ PTPSPVPTPL AGWMSSPSSV PHPAVSGGPI ALGAPSIQAA LKHPRTPPSN SAVDYPSGDS
0301: DHVSKRTRPM GISDEVSLGV NMLPMTFPGQ AHGHNQTFKA PDDLPKTVAR TLSQGSSPMS MDFHPIKQTL LLVGTNVGDI GLWEVGSRER LVQKTFKVWD
0401: LSKCSMPLQA ALVKEPVVSV NRVIWSPDGS LFGVAYSRHI VQLYSYHGGE DMRQHLEIDA HVGGVNDIAF STPNKQLCVT TCGDDKTIKV WDAATGVKRY
0501: TFEGHEAPVY SICPHYKENI QFIFSTALDG KIKAWLYDNM GSRVDYEAPG RWCTTMAYSA DGTRLFSCGT SKDGESFIVE WNESEGAVKR TYQGFHKRSL
0601: GVVQFDTTKN RYLAAGDDFS IKFWDMDTIQ LLTAIDADGG LQASPRIRFN KEGSLLAVSA NDNMIKVMAN SDGLRLLHTV ENLSSESSKP AINSIPMVER
0701: PASVVSIPGM NGDSRNMVDV KPVITEESND KSKVWKLTEV GEPSQCRSLR LPENMRVTKI SRLIFTNSGN AILALASNAI HLLWKWQRND RNATGKATAS
0801: LPPQQWQPAS GILMTNDVAE TNPEEAVPCF ALSKNDSYVM SASGGKISLF NMMTFKTMAT FMPPPPAATF LAFHPQDNNI IAIGMDDSTI QIYNVRVDEV
0901: KSKLKGHSKR ITGLAFSNVL NVLVSSGADA QLCVWNTDGW EKQKSKVLQI PQGRSTSSLS DTRVQFHQDQ VHFLVVHETQ LAIYETTKLE CMKQWPVRES
1001: AAPITHATFS CDSQLIYTSF MDATICVFSS ANLRLRCRVN PSAYLPASLS NSNVHPLVIA AHPQESNMFA VGLSDGGVHI FEPLESEGKW GVAPPPENGS
1101: ASAVTATPSV GASASDQPQR
Arabidopsis Description
TPR1Topless-related protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WV90]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.