Factsheet for Bra000550.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83225	Canola	cytosol	98.37	80.88
AT2G25420.4	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	71.87	59.17
Bra026751.1-P	Field mustard	cytosol	31.87	17.35
Bra021142.1-P	Field mustard	cytosol	31.87	17.3
Bra003569.1-P	Field mustard	cytosol	30.57	17.26
Bra026112.1-P	Field mustard	cytosol	31.38	17.23
Bra001613.1-P	Field mustard	cytosol	31.06	17.01
Bra006006.1-P	Field mustard	cytosol	26.18	16.45
Bra028653.1-P	Field mustard	mitochondrion	32.68	16.43
Bra006005.1-P	Field mustard	cytosol	28.62	16.39
Bra020567.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	28.13	16.23
Bra009930.1-P	Field mustard	cytosol	28.13	16.03
Bra022181.1-P	Field mustard	cytosol	27.64	15.02
Bra021203.1-P	Field mustard	cytosol	28.13	13.78

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EnsemblPlantsGene:Bra000550	EnsemblPlants:Bra000550.1	EnsemblPlants:Bra000550.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR001680	InterPro:IPR006594	InterPro:IPR015943	InterPro:IPR017986
InterPro:LisH	UniProt:M4C8M2	PFAM:PF00400	PFscan:PS50082	PFscan:PS50294	PFscan:PS50896
PANTHER:PTHR44083	SMART:SM00320	SMART:SM00667	SUPFAM:SSF50978	InterPro:Topless_fam	UniParc:UPI00025400AF
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:

Description

AT2G25420 (E=1e-132) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal to LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594); BEST Arabidopsis thaliana protein match is: protein binding (TAIR:AT3G15880.2); Has 2557 Blast hits to 2036 proteins in 230 species: Archae - 2; Bacteria - 361; Metazoa - 924; Fungi - 399; Plants - 275; Viruses - 0; Other Eukaryotes - 596 (source: NCBI BLink).

Coordinates

chrA03:+:11711851..11715493

Molecular Weight (calculated)

68630.0 Da

IEP (calculated)

8.349

GRAVY (calculated)

-0.153

Length

615 amino acids

Sequence
(BLAST)

001: MGDSTMILDE TNRKNLIFLI LQFLHEEGYE KSLHLIPEKT GSVDKALVRA SLCVDLRKLA ESNPSLCVKL VFPNLNKSAL LSLVSLICPN SNVRMGGSKE
101: DLIRLILQFL HEAKYKNTLH RFEQETKVFF NVNYLAEVMK LGEMGKAEEY LAAFTDKHAN IYSKAMFLEL QKLKWEATTP SGSLDNTSQK TKLLASVGML
201: AKKNPALKDK LSFPKMAKSR LLTLMKQTMD WWRPHSCSNS KSLEDIPVVP YLCSEPSSLK NELNRTKVGN CKLKEINHPS ECSSLVLPNY WSGERHTPRV
301: LKEDVFPKPR LHQPMSGKTM KNEIATSVED STSCFAIKGS YLFSTSGGKI AVFDLKSFER VASFGSPIKP TATYFIFIPV DLLAVGLDDG SILIHCLSSR
401: KIKEKLDGHD QRITCLAFSC CFNVLVSSGA DGKLCVWSTK RWLKLTSIDS IQNFCTRRNN VSSLVTQIQF DPYQIELLVV QDKWISRHAA PTLDCLRQWV
501: PDESEAAITS ATYSSDGEII CVGFRSESIK ILDSMTFLIK CRINLTAFTQ PIPSNIRVKV YPAVVAAHPS HPSQISVGLS NGKVIILQPL GRGGWGEADA
601: LEDDGDNSDG LEHCY

Best Arabidopsis Sequence Match ( AT2G25420.4 )
(BLAST)

001: MILDEKNRKN LVFLILQFFD EEGYEESLHL LEQDSGVFFD FSYLSNAILN GNWKDADDYL SAFTSPEANT FSRKMFFGLF KLKFSEAPDR SGGSEAVKIF
101: SKDLRRIPVL KDDSFDDLVE VIAVDDMRIP EETCCVDKAP GRAKLCVDLH KLAESNPSLR GKLDFPSLNK SALLALISLL CPNCSRRKGG LKEDLICLIL
201: QFLYEAKYKN TLHKLEQETK VFFNLNYLAE VMKLGEYGKA EEYLGAFTNW EDNKYSKAMF LELQKLICLQ STEWEVATPS GSLDNMSLKI KLHASVAMLA
301: KKNPVLKDEL KFPSMEKSRL LTLVKQTMDW WTCNNTSSLE NVPVVSYLCG TPSSMKFFFK KTVPRKKKPN EIKDPSQCNA LVLPDCFSEE KIARLTYSPS
401: GDYILALAED ATHKLWTWSS SQNEFCKYTP KILKENVYPK PRLHQPQSGK TMENEMATSV QKSTSCFAVK GSYLFSTSGG KIAVFDLKNF EKVASFGSPT
501: PMATYFIFIP GDLLAVGLDD GSIFIHCLSS RKVKEKLEGH DQKITCLAFS RCFNVLVSSD SDGKLCLWST KSWVKLTSKN STRKFCNRSN LESTSLVTHI
601: QFDPYQIELL VVHDGWIGLY EVRTLDCRLQ WIPDASDPAI TSATYSSDGE IIYVGFRCGS IKIVDSKTFM TLCQINLTSF TQLSTSNISL EVYPTVVAAH
701: PSHPNQISAG LSNGKVIVLQ PLWSGGWGEA APLEDNGDYS NDSDHSY

Arabidopsis Description

transducin family protein / WD-40 repeat family protein [Source:TAIR;Acc:AT2G25420]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.