Factsheet for Bra006005.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006006.1-P	Field mustard	cytosol	65.74	72.11
Bra028653.1-P	Field mustard	mitochondrion	74.67	65.58
VIT_11s0016g05620.t01	Wine grape	cytosol	62.29	59.1
KRH03669	Soybean	nucleus	62.38	59.08
KRH20137	Soybean	endoplasmic reticulum	62.1	58.87
PGSC0003DMT400079377	Potato	cytosol	59.31	56.17
Solyc07g008040.2.1	Tomato	nucleus	56.98	55.79
Bra003569.1-P	Field mustard	cytosol	56.05	55.28
Bra001613.1-P	Field mustard	cytosol	56.61	54.14
Bra026112.1-P	Field mustard	cytosol	56.05	53.75
Bra026751.1-P	Field mustard	cytosol	56.52	53.72
Bra021142.1-P	Field mustard	cytosol	56.52	53.57
Bra020567.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	51.12	51.5
Bra009930.1-P	Field mustard	cytosol	50.56	50.32
Bra022181.1-P	Field mustard	cytosol	51.68	49.03
Bra021203.1-P	Field mustard	cytosol	51.12	43.74
Bra000550.1-P	Field mustard	cytosol	16.39	28.62

Protein Annotations

MapMan:11.2.2.2	MapMan:15.5.53.1	Gene3D:2.130.10.10	InterPro:Apc4_WD40_dom	EnsemblPlantsGene:Bra006005	EnsemblPlants:Bra006005.1
EnsemblPlants:Bra006005.1-P	InterPro:CTLH_C	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001680
InterPro:IPR006594	InterPro:IPR006595	InterPro:IPR015943	InterPro:IPR017986	InterPro:LisH	UniProt:M4CP67
PFAM:PF00400	PFAM:PF12894	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PFscan:PS50896
PFscan:PS50897	PANTHER:PTHR44083	PANTHER:PTHR44083:SF4	SMART:SM00320	SMART:SM00667	SMART:SM00668
SUPFAM:SSF50978	InterPro:Topless_fam	UniParc:UPI000253F7B6	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

AT5G27030 (E=1e-306) TPR3 | TPR3 (TOPLESS-RELATED 3)

Coordinates

chrA03:+:1581063..1586625

Molecular Weight (calculated)

118587.0 Da

IEP (calculated)

6.731

GRAVY (calculated)

-0.311

Length

1074 amino acids

Sequence
(BLAST)

0001: MDTPTSELTF LILQFLDEEK HKETVHRLES ESGCYFNMRY FEELVTQGKW DEMEKYLFGF TMIEDNQQSM KIFFEIRKHK YLEALDKRDH AKAVDILRKD
0101: LRFYAPFSED LFKEMALLLT LDDFRENPKL SMYKKDTESE RGVLFRDLEK LIKDNPLFRN KLEFPTIKTS RLRTLINHSL NWQHKLCKNP KPKPDMETLF
0201: VDHICNQPIA ASPAISHPNI AAEVLSPHGP APSATIPAAP GAPVRRRRSA SLSAGSAIVM GPQTPSGHME NQTADSNNPL KRPRPCETSQ EVGNILPVSY
0301: SGEPHTLSPD DLPKVVATTL PQGSPVTSME FHPVQQILLL VGTIGGDVFL WDVGARKKIS EKCFDIWKLD ACSKELQESL NTDKTASVNH VAWSPDGTLF
0401: GVAYSKNIVH IYSFCRDNAV ISHLEIEAHR GSVNHLAFSY PNEQLSVVTC GDDRLIKVWD AATGATRFTF EGHEAPVFSV CPHQKENIQF VFSAATDGKV
0501: RTWLYDELGA RGTYDAPGHS LIRMAYSSDG TRLFSCGTNK EGESFLVEWD ESEGSIQRTY DGLGQRAAGI VQFDTTKNRF LAAGAESTIK IWDMNNTNIL
0601: TNIHADSGLP ASPCVRFNRE GILLAVSTSD NGVKILATDD GFRLLRTAEN RSLAFKVPGG GGFGSSSANA GITMANQSTS FSATKKNEVR TLADGKPRTS
0701: NFSSEVSTSW KVTEITEPSQ CYSLRLPDNV TVKKVSRLIY TNSGSGVLAL ASNAEHKLWK WRNSDLNLDG KATDNAAHPV LWKPKSGIMM INETSDKTPE
0801: EAIPCLALSN NDAYLVSASG GEISLFNMAT FKCMATYMPP PPAATFLAFH PSENNIIGIG FEDSSIQIYN LRTSEVRAIL NGHTKRITGL AFSLALNILV
0901: SSGADSQVCV WGMAGWEKRS SMYLKASKGR SMPAVSDTRV QFHQNEIHLL VVNETQIAIY DAQKLDCLKL WFRCEATIPI TSGTYSGDSK SIFVGFEDGT
1001: VNVLTASNLR LRCRINPTAY LPSNPSSNVH PPLVIAAHPT ESNQFAVGLS NGHVYVVEAS ESEGRWGTSP PGST

Best Arabidopsis Sequence Match ( AT1G80490.2 )
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEDEVHNGNW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDRHDR PKAVDILVKD
0101: LKVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPTLRTSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCRLPNDA RAPSPVNNPL LGSLPKAEGF PPLGAHGPFQ PTPSPVPTPL AGWMSSPSSV PHPAVSGGPI ALGAPSIQAA LKHPRTPPSN SAVDYPSGDS
0301: DHVSKRTRPM GISDEVSLGV NMLPMTFPGQ AHGHNQTFKA PDDLPKTVAR TLSQGSSPMS MDFHPIKQTL LLVGTNVGDI GLWEVGSRER LVQKTFKVWD
0401: LSKCSMPLQA ALVKEPVVSV NRVIWSPDGS LFGVAYSRHI VQLYSYHGGE DMRQHLEIDA HVGGVNDIAF STPNKQLCVT TCGDDKTIKV WDAATGVKRY
0501: TFEGHEAPVY SICPHYKENI QFIFSTALDG KIKAWLYDNM GSRVDYEAPG RWCTTMAYSA DGTRLFSCGT SKDGESFIVE WNESEGAVKR TYQGFHKRSL
0601: GVVQFDTTKN RYLAAGDDFS IKFWDMDTIQ LLTAIDADGG LQASPRIRFN KEGSLLAVSA NDNMIKVMAN SDGLRLLHTV ENLSSESSKP AINSIPMVER
0701: PASVVSIPGM NGDSRNMVDV KPVITEESND KSKVWKLTEV GEPSQCRSLR LPENMRVTKI SRLIFTNSGN AILALASNAI HLLWKWQRND RNATGKATAS
0801: LPPQQWQPAS GILMTNDVAE TNPEEAVPCF ALSKNDSYVM SASGGKISLF NMMTFKTMAT FMPPPPAATF LAFHPQDNNI IAIGMDDSTI QIYNVRVDEV
0901: KSKLKGHSKR ITGLAFSNVL NVLVSSGADA QLCVWNTDGW EKQKSKVLQI PQGRSTSSLS DTRVQFHQDQ VHFLVVHETQ LAIYETTKLE CMKQWPVRES
1001: AAPITHATFS CDSQLIYTSF MDATICVFSS ANLRLRCRVN PSAYLPASLS NSNVHPLVIA AHPQESNMFA VGLSDGGVHI FEPLESEGKW GVAPPPENGS
1101: ASAVTATPSV GASASDQPQR

Arabidopsis Description

TPR1Topless-related protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WV90]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.