Factsheet for Bra001613.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82426	Canola	cytosol	99.73	98.85
CDX75851	Canola	cytosol	98.75	97.88
AT3G15880.2	Thale cress	cytosol	94.66	93.49
Bra021142.1-P	Field mustard	cytosol	93.68	92.85
Solyc03g116750.2.1	Tomato	nucleus	76.14	75.53
VIT_09s0002g07020.t01	Wine grape	cytosol	76.4	75.4
Bra003569.1-P	Field mustard	cytosol	67.68	69.79
Bra026112.1-P	Field mustard	cytosol	69.19	69.38
Bra026751.1-P	Field mustard	cytosol	69.55	69.11
Bra020567.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	57.52	60.6
Bra028653.1-P	Field mustard	mitochondrion	65.54	60.18
Bra009930.1-P	Field mustard	cytosol	57.61	59.96
Bra022181.1-P	Field mustard	cytosol	59.04	58.57
Bra006005.1-P	Field mustard	cytosol	54.14	56.61
Bra021203.1-P	Field mustard	cytosol	58.95	52.75
Bra006006.1-P	Field mustard	cytosol	44.7	51.28
Bra000550.1-P	Field mustard	cytosol	17.01	31.06

Protein Annotations

MapMan:11.2.2.2	MapMan:15.5.53.1	Gene3D:2.130.10.10	EnsemblPlantsGene:Bra001613	EnsemblPlants:Bra001613.1	EnsemblPlants:Bra001613.1-P
InterPro:CTLH_C	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001680	InterPro:IPR006594
InterPro:IPR006595	InterPro:IPR015943	InterPro:IPR017986	InterPro:LisH	UniProt:M4CBN3	PFAM:PF00400
PFscan:PS50082	PFscan:PS50294	PFscan:PS50896	PFscan:PS50897	PANTHER:PTHR44083	PANTHER:PTHR44083:SF1
SMART:SM00320	SMART:SM00667	SMART:SM00668	SUPFAM:SSF50978	InterPro:Topless_fam	UniParc:UPI0002540A52
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

AT3G15880 (E=0.0) WSIP2, TPR4 | protein binding

Coordinates

chrA03:-:17397846..17404053

Molecular Weight (calculated)

122792.0 Da

IEP (calculated)

7.572

GRAVY (calculated)

-0.338

Length

1123 amino acids

Sequence
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKDTVHRLEK ESGFYFNMRY FEDSVTAGEW DDVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDKKDN AKAVDILVKE
0101: LKVFSTFNEE LFKEITMLLT LTNFRENEQL SKYGDTKSAR GIMLGELKKL IEANPLFRDK LQFPTLKNSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFI
0201: DHSCGHPNGS HVASPATNHL MGSAPKVGGF PPLGAHGPFQ PTPAPLTTSL AGWMPNPSVS HPTVSAGPIG LGAPNSAVSM LKHPRTPPTN SLAMDYQTAD
0301: SESVLKRPRP FGISDGVNNL PVNVLPVTYP GQSHSHAAYS TDDLPKNVSR VLSQGSAIKS MDFHPVQQTM LLVGTNVGDI AIWEVGSRDK LVSRSFKVWD
0401: LAACTANLQA SLASEYTAAV NRVVWSPDGG LLGVAYSKHI VHIYSYHGGN DLRNHLEVDA HAGNVNDLAF SLPNQQLCFV TCGEDKTIKV WDAVTGNKLH
0501: TFEGHDAPVY SVCPHQKENI QFIFSTAVDG KIKAWLYDNM GSRVDYDAPG RSCTAMAYCA DGTRLFSCGT SKEGESFIVE WNESEGAVKR TYHGLGKRSV
0601: GVVQFDTMKN KFLVAGDEFQ VKFWDMDSVD LLTTTHADGG LPSSPCLRIN KEGTLLAVST TENGIKILAN AEGSRILHSM ANRGLESSRG PPGSVAKGPI
0701: VGAFGTPSSS TGMSLSMADR SGPGASVTGM NGDNRNLPDV KPRIPDEAEK SKIWKLTEIS ERSQLRTLRL PDSLIQARVV KLIYTNSGSA ILALAENALH
0801: KLWKWQKSER NLLGKANSHV PPQLWQPSSG VVMTNDTREG SKEDVVPCFA LSKNDSYVMS ASGGKISLFN MMTFKTMTTF MAPPPAATSL AFHPQDNNII
0901: AIGMDDSSIQ IYNVRVDEVK SKLKGHQKRV TGLAFSNVLN LCVWSTDGWE KQASKQIQIP SGHSPNPLAH TRVQFHQDQT HVLVVHASQL AIYEAPKLES
1001: MKQWIPKESS GSVTDAVYSC DSQSIYAAFD DGSVSILTAT TLQLKCRIGP NSYLPSNPSS RVYPATIAAH PSEPNQFAVG LTDGGVHVIE PPGPEGKWGM
1101: SPPPENGAGP SVSSAPGSDQ QPR

Best Arabidopsis Sequence Match ( AT3G15880.4 )
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKDTVHRLEK ESGFFFNMRY FEDSVTAGEW DDVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDKKDH AKAVDILVKE
0101: LKVFSTFNEE LFKEITMLLT LTNFRENEQL SKYGDTKSAR GIMLGELKKL IEANPLFRDK LQFPSLKNSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHTCGHPNGA HTPSPTTNHL MGSVPKVGGF PPLGAHGPFQ PTPAPLTTSL AGWMPNPSVQ HPTVSAGPIG LGAPNSAVSM LKRERPRSPP TNSLSMDYQT
0301: ADSESVLKRP RPFGISDGVN NLPVNVLPVT YPGQSHAHAT YSTDDLPKNV SRILSQGSAI KSMDFHPVQQ TMLLVGTNLG DIAIWEVGSR EKLVSRSFKV
0401: WDLATCTVNL QASLASEYTA AVNRVVWSPD GGLLGVAYSK HIVHIYSYHG GEDLRNHLEI DAHAGNVNDL AFSQPNQQLC VVTCGEDKTI KVWDAVTGNK
0501: LHTFEGHEAP VYSVCPHQKE NIQFIFSTAV DGKIKAWLYD NMGSRVDYDA PGRSCTSMAY CADGTRLFSC GTSKEGESFI VEWNESEGAV KRTYLGLGKR
0601: SVGVVQFDTM KNKFLVAGDE FQVKFWDMDS VDLLSSTAAE GGLPSSPCLR INKEGTLLAV STTDNGIKIL ANAEGSRILH SMANRGLDSS RAPPGSVAKG
0701: PIVGTFGTPN SSTGMSLSMG ERSGPVASVT GLNGDNRSLP DVKPRIADDA EKSKTWKLTE ISERSQLRTL RLPDTLLPAR VVKLIYTNSG GAILALAENA
0801: AHKLWKWQKS ERNLLGKANS NVPPQLWQPS SGVLMTNDTR EGNKEDVVPC FALSKNDSYV MSASGGKISL FNMMTFKTMT TFMAPPPAAT SLAFHPQDNN
0901: IIAIGMDDSS IQIYNVRVDE VKSKLKGHQK RVTGLAFSNV LNVLVSSGAD SQLCVWSMDG WEKQASKQIQ IPSGHSPNPL AHTRVQFHQD QIHVLVVHAS
1001: QLAIYEAPKL ENMKQWIPKE SSGSVTDAVY SCDSQSIYAA FDDGSVSILT ATTLQLKCRI GPNSYLPSNP SSRVYPATVA AHPSEPNQFA VGLTDGGVHV
1101: IEPPGPEGKW GISAPPENGA GPSVSSAPGS DQQPR

Arabidopsis Description

WSIP2WUS-interacting protein 2 [Source:TAIR;Acc:AT3G15880]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.