Factsheet for VIT_09s0002g07020.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g116750.2.1	Tomato	nucleus	79.88	80.3
VIT_11s0016g05620.t01	Wine grape	cytosol	78.73	79.15
AT3G15880.2	Thale cress	cytosol	76.71	76.78
CDX75851	Canola	cytosol	76.1	76.43
Bra001613.1-P	Field mustard	cytosol	75.4	76.4
CDX82426	Canola	cytosol	76.01	76.35
CDY20161	Canola	cytosol	75.83	76.17
Bra021142.1-P	Field mustard	cytosol	75.66	75.99
CDY21881	Canola	cytosol	75.48	75.82
VIT_09s0002g08370.t01	Wine grape	cytosol	72.58	72.58
VIT_16s0039g02410.t01	Wine grape	cytosol	65.47	65.64
VIT_14s0060g01680.t01	Wine grape	cytosol	60.98	61.31
VIT_04s0008g06380.t01	Wine grape	cytosol	9.31	58.89
VIT_04s0008g06350.t01	Wine grape	cytosol	6.33	53.73
VIT_04s0008g06340.t01	Wine grape	cytosol	8.0	52.91
VIT_04s0008g06400.t01	Wine grape	mitochondrion	9.05	50.74
VIT_04s0008g06330.t01	Wine grape	extracellular	50.53	50.57
VIT_04s0008g06360.t01	Wine grape	cytosol	2.99	44.16
VIT_04s0008g06390.t01	Wine grape	extracellular	8.35	43.38
VIT_04s0008g06370.t01	Wine grape	cytosol	10.9	34.83

Protein Annotations

EntrezGene:100247343	wikigene:100247343	MapMan:11.2.2.2	MapMan:15.5.53.1	Gene3D:2.130.10.10	EMBL:AM429206
ProteinID:CAN64663	ProteinID:CAN64663.1	ProteinID:CBI36337	ProteinID:CBI36337.3	InterPro:CTLH_C	UniProt:D7U141
EMBL:FN596494	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001680	InterPro:IPR006594
InterPro:IPR006595	InterPro:IPR015943	InterPro:IPR017986	EntrezGene:LOC100247343	wikigene:LOC100247343	InterPro:LisH
PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PFscan:PS50896	PFscan:PS50897
PANTHER:PTHR44083	PANTHER:PTHR44083:SF1	SMART:SM00320	SMART:SM00667	SMART:SM00668	SUPFAM:SSF50978
TIGR:TC64749	TIGR:TC65958	InterPro:Topless_fam	UniParc:UPI00015CCFB0	ArrayExpress:VIT_09s0002g07020	EnsemblPlantsGene:VIT_09s0002g07020
EnsemblPlants:VIT_09s0002g07020.t01	unigene:Vvi.12664	unigene:Vvi.8489	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002265778	RefSeq:XP_002265778.1	RefSeq:XP_003632760	RefSeq:XP_003632760.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr9:-:6900976..6917647

Molecular Weight (calculated)

125107.0 Da

IEP (calculated)

6.933

GRAVY (calculated)

-0.270

Length

1138 amino acids

Sequence
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKDTVHRLEK ESGFFFNMRY FEDCVTNGEW DEVENYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDKHDH AKAVDILVKD
0101: LKTFSTFNEE LFKEITLLLT LGNFRENEQL SKYGDTKTAR GIMLLELKKL IEANPLFRDK LQFPGLKNSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFT
0201: DHTCGQPNGS RAPSPATSSL MGSIPKVGGF PPLGAHGPFQ SAPAPAPTPL TPPLAGWMTN PASVPHQTVS AGPLGLTVPS NAASMLKHPR TPSTNNNLAM
0301: DYQTADSEHM LKRSRPFGIS DEANNMPVNI LPISYPGQSH THTLYSSNDL PKTVVGKLAQ GSAVRSMDFH PIQHTLLLVG TNIGDITIWE VGGGARLVLK
0401: NFKVWDLGSC SGTLQASLAN ESAASVNRVT WSPDGSICGV AYSKHIVHIF SYYGGDDLRN HLEIEAHIGN VSDLAFSQPN KQLCIITCGE DKTIKVWDVV
0501: TGSKQYTFDG HEAPVYSVCP HYKENIQFIF STAIDGKIKA WLYDNLGSRV DYDAPGHSCT MMAYSSDGTR LFSCGTNKEG ESYIVEWNES EGAVKRTYHG
0601: LGKRSVGIVQ FDTTKNRFLV AGDEYLIKFW DMDNVSMLMS TDADGGLPAS PCIRFNKEGT LLAVSTNENG IKILANADGV QLVRLIESRA HDASRSASGT
0701: VAKGPVMGTY GASSSAAGTS IGDRSAIVPA MVGLNGDSRS MPDVKPRILD DSDKSKVWKL TEINEPSQIH SLRLPDTLLA VRIIRLIYTN SGSAILVLTL
0801: NAVHKLWKWQ RNERNPTGKA CTSVSPQLWQ PSSGILMTND ISETNLEDAV PCFALSKNDS YVMSASGGKI SLFNMMTFKT MTTFMPPPPA ATFLAFHPQD
0901: NNIIAIGMED SSIQIYNVRV DEVKSKLKGH QKKVTGLAFS NVLNVLVSSG ADAQLCVWST DVWEKQTSKF LQIPNGRVPA PNTQTRVQFH QNQTHVLVVH
1001: ETQIAIYEAP RLECLMQWVP REPSSSITDA TYSCDSQSIF ISFEDGSLSV LTAATLRLRC KINPSAYLPS NPSMRVYPLV VAGHPSEPNQ FAVGLTDGGV
1101: HVLEPLESEG RWGIPPPLEN GAGPSVTSAP ASSDQQPR

Best Arabidopsis Sequence Match ( AT3G15880.4 )
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKDTVHRLEK ESGFFFNMRY FEDSVTAGEW DDVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDKKDH AKAVDILVKE
0101: LKVFSTFNEE LFKEITMLLT LTNFRENEQL SKYGDTKSAR GIMLGELKKL IEANPLFRDK LQFPSLKNSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHTCGHPNGA HTPSPTTNHL MGSVPKVGGF PPLGAHGPFQ PTPAPLTTSL AGWMPNPSVQ HPTVSAGPIG LGAPNSAVSM LKRERPRSPP TNSLSMDYQT
0301: ADSESVLKRP RPFGISDGVN NLPVNVLPVT YPGQSHAHAT YSTDDLPKNV SRILSQGSAI KSMDFHPVQQ TMLLVGTNLG DIAIWEVGSR EKLVSRSFKV
0401: WDLATCTVNL QASLASEYTA AVNRVVWSPD GGLLGVAYSK HIVHIYSYHG GEDLRNHLEI DAHAGNVNDL AFSQPNQQLC VVTCGEDKTI KVWDAVTGNK
0501: LHTFEGHEAP VYSVCPHQKE NIQFIFSTAV DGKIKAWLYD NMGSRVDYDA PGRSCTSMAY CADGTRLFSC GTSKEGESFI VEWNESEGAV KRTYLGLGKR
0601: SVGVVQFDTM KNKFLVAGDE FQVKFWDMDS VDLLSSTAAE GGLPSSPCLR INKEGTLLAV STTDNGIKIL ANAEGSRILH SMANRGLDSS RAPPGSVAKG
0701: PIVGTFGTPN SSTGMSLSMG ERSGPVASVT GLNGDNRSLP DVKPRIADDA EKSKTWKLTE ISERSQLRTL RLPDTLLPAR VVKLIYTNSG GAILALAENA
0801: AHKLWKWQKS ERNLLGKANS NVPPQLWQPS SGVLMTNDTR EGNKEDVVPC FALSKNDSYV MSASGGKISL FNMMTFKTMT TFMAPPPAAT SLAFHPQDNN
0901: IIAIGMDDSS IQIYNVRVDE VKSKLKGHQK RVTGLAFSNV LNVLVSSGAD SQLCVWSMDG WEKQASKQIQ IPSGHSPNPL AHTRVQFHQD QIHVLVVHAS
1001: QLAIYEAPKL ENMKQWIPKE SSGSVTDAVY SCDSQSIYAA FDDGSVSILT ATTLQLKCRI GPNSYLPSNP SSRVYPATVA AHPSEPNQFA VGLTDGGVHV
1101: IEPPGPEGKW GISAPPENGA GPSVSSAPGS DQQPR

Arabidopsis Description

WSIP2WUS-interacting protein 2 [Source:TAIR;Acc:AT3G15880]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.