Factsheet for VIT_04s0008g06390.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92538	Sorghum	cytosol	47.03	9.16
VIT_09s0002g08370.t01	Wine grape	cytosol	47.49	9.14
Os03t0254700-01	Rice	cytosol	46.58	9.0
TraesCS4D01G221200.1	Wheat	cytosol	46.12	8.91
TraesCS4A01G083300.2	Wheat	cytosol	46.12	8.9
HORVU0Hr1G008690.1	Barley	cytosol, endoplasmic reticulum	46.12	8.89
TraesCS4B01G220900.3	Wheat	cytosol	45.66	8.8
GSMUA_Achr6P36440_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	46.12	8.75
VIT_16s0039g02410.t01	Wine grape	cytosol	45.21	8.72
VIT_11s0016g05620.t01	Wine grape	cytosol	44.75	8.66
VIT_14s0060g01680.t01	Wine grape	cytosol	44.29	8.57
GSMUA_Achr4P09920_001	Banana	cytosol	44.75	8.52
VIT_04s0008g06330.t01	Wine grape	extracellular	43.38	8.36
VIT_09s0002g07020.t01	Wine grape	cytosol	43.38	8.35
GSMUA_Achr6P22950_001	Banana	plasma membrane	46.12	8.16
Zm00001d052868_P001	Maize	cytosol, peroxisome, plasma membrane	4.11	3.81
Zm00001d045829_P001	Maize	mitochondrion	4.57	3.07
Zm00001d027915_P001	Maize	cytosol	3.65	2.58
VIT_04s0008g06380.t01	Wine grape	cytosol	1.83	2.22
Zm00001d050983_P001	Maize	cytosol	1.83	1.6
VIT_04s0008g06360.t01	Wine grape	cytosol	0.46	1.3
Zm00001d004623_P001	Maize	cytosol, plastid	1.37	1.11
VIT_04s0008g06400.t01	Wine grape	mitochondrion	0.91	0.99
VIT_04s0008g06340.t01	Wine grape	cytosol	0.46	0.58
VIT_04s0008g06370.t01	Wine grape	cytosol	0.46	0.28
VIT_04s0008g06350.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	ProteinID:CBI21122	ProteinID:CBI21122.3	UniProt:D7SV23	EMBL:FN595231
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR015943	PANTHER:PTHR44083	PANTHER:PTHR44083:SF2
SUPFAM:SSF50978	SignalP:SignalP-noTM	InterPro:Topless_fam	UniParc:UPI0001BE1B4E	ArrayExpress:VIT_04s0008g06390	EnsemblPlantsGene:VIT_04s0008g06390
EnsemblPlants:VIT_04s0008g06390.t01	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat_dom_sf	:	:	:

Description

No Description!

Coordinates

chr4:+:6279733..6280638

Molecular Weight (calculated)

24366.6 Da

IEP (calculated)

6.649

GRAVY (calculated)

0.123

Length

219 amino acids

Sequence
(BLAST)

001: MLCVCVFFFN LFKYLDTFFP QHIWSTSVDG KIKEWTYDKD HSIAEYDAPG CCCTTMSFGA DGERLISCGT TKDGVSHLVE WHEMGSIMKR TIQGVNKCSF
101: GVMQFDTAKN GLLVAGDDFS LKFWDLNAVD LVTPIDASEM LPASRLIRFN KEGTLLAVTA NDNKIKILVS VNGFQLLQTN ERVPCVPATV PKVSSIRKPS
201: LTVMQGNSSY LVLLLFHMA

Best Arabidopsis Sequence Match ( AT1G15750.1 )
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEDEVHNGNW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDKHDR PKAVDILVKD
0101: LKVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPTLRNSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCGPPNGA RAPSPVNNPL LGGIPKAGGF PPLGAHGPFQ PTASPVPTPL AGWMSSPSSV PHPAVSAGAI ALGGPSIPAA LKHPRTPPTN ASLDYPSADS
0301: EHVSKRTRPM GISDEVNLGV NMLPMSFSGQ AHGHSPAFKA PDDLPKTVAR TLSQGSSPMS MDFHPIKQTL LLVGTNVGDI GLWEVGSRER LVQKTFKVWD
0401: LSKCSMPLQA ALVKEPVVSV NRVIWSPDGS LFGVAYSRHI VQLYSYHGGE DMRQHLEIDA HVGGVNDISF STPNKQLCVI TCGDDKTIKV WDAATGVKRH
0501: TFEGHEAPVY SVCPHYKENI QFIFSTALDG KIKAWLYDNM GSRVDYDAPG RWCTTMAYSA DGTRLFSCGT SKDGESFIVE WNESEGAVKR TYQGFHKRSL
0601: GVVQFDTTKN RYLAAGDDFS IKFWDMDAVQ LLTAIDGDGG LQASPRIRFN KEGSLLAVSG NENVIKIMAN SDGLRLLHTF ENISSESSKP AINSIAAAAA
0701: AAATSAGHAD RSANVVSIQG MNGDSRNMVD VKPVITEESN DKSKIWKLTE VSEPSQCRSL RLPENLRVAK ISRLIFTNSG NAILALASNA IHLLWKWQRN
0801: ERNATGKATA SLPPQQWQPA SGILMTNDVA ETNPEEAVPC FALSKNDSYV MSASGGKISL FNMMTFKTMA TFMPPPPAAT FLAFHPQDNN IIAIGMDDST
0901: IQIYNVRVDE VKSKLKGHSK RITGLAFSNV LNVLVSSGAD AQLCVWNTDG WEKQRSKVLP LPQGRPNSAP SDTRVQFHQD QAHFLVVHET QLAIYETTKL
1001: ECMKQWAVRE SLAPITHATF SCDSQLVYAS FMDATVCVFS SANLRLRCRV NPSAYLPASL SNSNVHPLVI AAHPQEPNMF AVGLSDGGVH IFEPLESEGK
1101: WGVAPPAENG SASGAPTAPS VGASASDQPQ R

Arabidopsis Description

TPLProtein TOPLESS [Source:UniProtKB/Swiss-Prot;Acc:Q94AI7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.