Factsheet for TraesCS4A01G083300.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G221200.1	Wheat	cytosol	99.82	99.91
TraesCS4B01G220900.3	Wheat	cytosol	99.74	99.65
HORVU0Hr1G008690.1	Barley	cytosol, endoplasmic reticulum	98.59	98.5
Os03t0254700-01	Rice	cytosol	93.66	93.82
EER92538	Sorghum	cytosol	90.93	91.73
Zm00001d028481_P017	Maize	cytosol	90.66	90.98
Zm00001d047897_P013	Maize	cytosol	90.31	90.63
GSMUA_Achr4P09920_001	Banana	cytosol	83.96	82.87
GSMUA_Achr6P36440_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	83.52	82.15
KRH23604	Soybean	endoplasmic reticulum	80.79	81.01
KRH44501	Soybean	cytosol	80.53	80.67
KRH47407	Soybean	cytosol	80.18	80.53
VIT_09s0002g08370.t01	Wine grape	cytosol	80.53	80.32
KRH09700	Soybean	cytosol	79.3	79.65
AT1G15750.3	Thale cress	cytosol	78.33	78.6
CDX81729	Canola	cytosol	77.18	78.42
CDY53312	Canola	cytosol	75.68	78.38
Bra003569.1-P	Field mustard	cytosol	75.07	78.24
Bra026751.1-P	Field mustard	cytosol	77.89	78.23
CDY36584	Canola	cytosol	77.0	78.18
CDY33387	Canola	cytosol	77.0	78.18
Bra026112.1-P	Field mustard	cytosol	77.09	78.12
AT1G80490.2	Thale cress	cytosol	77.0	78.04
CDX67950	Canola	cytosol	76.92	77.67
CDX79383	Canola	cytosol	76.39	77.41
PGSC0003DMT400036646	Potato	cytosol, plastid	20.7	76.8
GSMUA_Achr6P22950_001	Banana	plasma membrane	83.7	76.74
PGSC0003DMT400036648	Potato	plastid	58.41	75.6
TraesCS7A01G296100.6	Wheat	cytosol	67.93	67.75
PGSC0003DMT400036649	Potato	cytosol	26.7	62.22
TraesCS3A01G173300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	62.03	61.97
VIT_04s0008g06380.t01	Wine grape	cytosol	9.78	61.67
Solyc05g016070.1.1	Tomato	cytosol	6.43	55.73
VIT_04s0008g06400.t01	Wine grape	mitochondrion	9.87	55.17
VIT_04s0008g06340.t01	Wine grape	cytosol	8.28	54.65
VIT_04s0008g06330.t01	Wine grape	extracellular	54.45	54.35
KRH61732	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	46.87	50.19
KRH52398	Soybean	cytosol	46.52	50.09
KRH05196	Soybean	cytosol	23.17	48.43
VIT_04s0008g06390.t01	Wine grape	extracellular	8.9	46.12
CDX79301	Canola	cytosol	5.81	30.41

Protein Annotations

MapMan:11.2.2.2	MapMan:15.5.53.1	Gene3D:2.130.10.10	InterPro:CTLH_C	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR001680	InterPro:IPR006594	InterPro:IPR006595	InterPro:IPR015943	InterPro:IPR017986
InterPro:LisH	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PFscan:PS50896
PFscan:PS50897	PANTHER:PTHR44083	PANTHER:PTHR44083:SF2	SMART:SM00320	SMART:SM00667	SMART:SM00668
SUPFAM:SSF50978	InterPro:Topless_fam	EnsemblPlantsGene:TraesCS4A01G083300	EnsemblPlants:TraesCS4A01G083300.2	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	TIGR:cd00200	SEG:seg	:

Description

No Description!

Coordinates

chr4A:-:87392907..87400851

Molecular Weight (calculated)

125170.0 Da

IEP (calculated)

7.138

GRAVY (calculated)

-0.310

Length

1135 amino acids

Sequence
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFYFNMKY FEDEVINGNW DEVERYLGGF TKVDDNRYSM KIFFEIRKQK YLEALDKHDR SKAVEILVKD
0101: LKVFASFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPNLKSSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCGQPNGA RAPSPANNPL LGSIPKPGGF PQLGAHGPFQ PAPTPVAPLA GWMSNPPAVT HPAVSGGAIG FGTPTNPAAM LKHPRTPSAA NPSMDYPSGD
0301: SDHVSKRPRP VGLSEEVNLP VNMMPVTYPQ SHSYPQDDFH KAVARTLSQG SAPMSMDFHP VQQTLLLVGT NVGDIGLWDV GTKERLVVRN FKVWELGKCS
0401: MALQAALVKD PTVSVNRIIW SPDGTLFGVA YSRHIVQIYS YHGGDDIRQH LEIDAHVGGV NDIAFAHPNK QLCIITCGDD KTIKVWEATS GTKQFTFEGH
0501: EAPVYSVCPH YKENIQFIFS TALDGKIKAW LYDNLGSRVD YDAPGHWCTT MAYSADGSRL FSCGTSKDGE SHLVEWNESE GAVKRTYQGF RKRSMGVVQF
0601: DTTRNRFLAA GDEFVIKIWD MDNTSLLTTI EADGGLPASP RIRFNKEGTL LAVSTVDNGI KVLANADGVR LLRTLENRSF DASRSASETV TKPLINPLTA
0701: AAAAAAAAAA AATSSGTAAP SPITAMNGDN RSMVDVKPRI ADESMDKSKV WKLMEITDTA QCRSLKLGDS IRTAKISRLI YTNSGVAILA LASNAVHLLW
0801: KWPRNERNST GKATASVSPQ LWQPPSGILM TNDTIDNSPD EAVHCFALSK NDSYVMSASG GKISLFNMMT FKTMTTFMPP PPAATFLAFH PQDNNIIAIG
0901: MDDSTIQIYN VRIDEVKSKL RGHSKKITGL AFSNVLNVLV SSGADAQICV WNTDGWERQR SRFLQIPSGR PTSNILDTRV QFHQDQQHCL VVHETQIAIY
1001: DASKLEPVKQ WPPRETSAPP ITHATFSCDS QLIYASFLDA TVCIFSASSL RLQCRILPAS YLPQNISSNV HPVVVAAHPS EANQFALGLT DGSVYVMEPL
1101: ESERKWGIPP PAENGSTSNM STPPNGASSS DQPER

Best Arabidopsis Sequence Match ( AT1G80490.3 )
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEDEVHNGNW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDRHDR PKAVDILVKD
0101: LKVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPTLRTSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCRLPNDA RAPSPVNNPL LGSLPKAEGF PPLGAHGPFQ PTPSPVPTPL AGWMSSPSSV PHPAVSGGPI ALGAPSIQAA LKHPRTPPSN SAVDYPSGDS
0301: DHVSKRTRPM GISDEVSLGV NMLPMTFPGQ AHGHNQTFKA PDDLPKTVAR TLSQGSSPMS MDFHPIKQTL LLVGTNVGDI GLWEVGSRER LVQKTFKVWD
0401: LSKCSMPLQA ALVKEPVVSV NRVIWSPDGS LFGVAYSRHI VQLYSYHGGE DMRQHLEIDA HVGGVNDIAF STPNKQLCVT TCGDDKTIKV WDAATGVKRY
0501: TFEGHEAPVY SICPHYKENI QFIFSTALDG KIKAWLYDNM GSRVDYEAPG RWCTTMAYSA DGTRLFSCGT SKDGESFIVE WNESEGAVKR TYQGFHKRSL
0601: GVVQFDTTKN RYLAAGDDFS IKFWDMDTIQ LLTAIDADGG LQASPRIRFN KEGSLLAVSA NDNMIKVMAN SDGLRLLHTV ENLSSESSKP AINSIPMVER
0701: PASVVSIPGM NGDSRNMVDV KPVITEESND KSKVWKLTEV GEPSQCRSLR LPENMRVTKI SRLIFTNSGN AILALASNAI HLLWKWQRND RNATGKATAS
0801: LPPQQWQPAS GILMTNDVAE TNPEEAVPCF ALSKNDSYVM SASGGKISLF NMMTFKTMAT FMPPPPAATF LAFHPQDNNI IAIGMDDSTI QIYNVRVDEV
0901: KSKLKGHSKR ITGLAFSNVL NVLVSSGADA QLCVWNTDGW EKQKSKVLQI PQGRSTSSLS DTRVQFHQDQ VHFLVVHETQ LAIYETTKLE CMKQWPVRES
1001: AAPITHATFS CDSQLIYTSF MDATICVFSS ANLRLRCRVN PSAYLPASLS NSNVHPLVIA AHPQESNMFA VGLSDGGVHI FEPLESEGKW GVAPPPENGS
1101: ASAVTATPSV GASASDQPQR

Arabidopsis Description

TPR1Topless-related protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WV90]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.