CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 2
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47407	Soybean	cytosol	98.5	98.76
KRH23604	Soybean	endoplasmic reticulum	94.35	94.43
KRH09700	Soybean	cytosol	92.23	92.48
VIT_09s0002g08370.t01	Wine grape	cytosol	89.41	89.02
Solyc03g117360.2.1	Tomato	nucleus	86.5	86.73
CDX81729	Canola	cytosol	84.02	85.23
CDY53312	Canola	cytosol	82.35	85.13
AT1G15750.3	Thale cress	cytosol	84.82	84.97
CDY36584	Canola	cytosol	83.76	84.88
Bra003569.1-P	Field mustard	cytosol	81.55	84.85
Bra026751.1-P	Field mustard	cytosol	84.47	84.69
AT1G80490.2	Thale cress	cytosol	83.67	84.64
Bra026112.1-P	Field mustard	cytosol	83.67	84.64
CDY33387	Canola	cytosol	83.5	84.62
CDX67950	Canola	cytosol	83.58	84.25
CDX79383	Canola	cytosol	83.05	84.02
GSMUA_Achr4P09920_001	Banana	cytosol	82.7	81.48
Os03t0254700-01	Rice	cytosol	81.02	81.02
EER92538	Sorghum	cytosol	80.05	80.62
TraesCS4D01G221200.1	Wheat	cytosol	80.67	80.6
TraesCS4A01G083300.2	Wheat	cytosol	80.67	80.53
TraesCS4B01G220900.3	Wheat	cytosol	80.58	80.37
HORVU0Hr1G008690.1	Barley	cytosol, endoplasmic reticulum	80.49	80.28
GSMUA_Achr6P36440_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	81.38	79.9
KRH33863	Soybean	cytosol	18.36	75.64
KRH03669	Soybean	nucleus	75.64	75.57
KRH20137	Soybean	endoplasmic reticulum	75.46	75.46
GSMUA_Achr6P22950_001	Banana	plasma membrane	81.47	74.56
KRG92932	Soybean	nucleus	63.81	63.98
KRH68470	Soybean	nucleus	63.11	63.27
KRG96753	Soybean	endoplasmic reticulum	62.93	63.1
KRH33861	Soybean	cytosol	45.54	61.28
KRH61732	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	49.16	52.55
KRH52398	Soybean	cytosol	48.72	52.37
KRH30800	Soybean	mitochondrion	14.47	50.31
KRH05196	Soybean	cytosol	24.01	50.09
Zm00001d050983_P001	Maize	cytosol	10.86	49.2
Zm00001d004623_P001	Maize	cytosol, plastid	10.94	45.93
Zm00001d027915_P001	Maize	cytosol	11.21	40.97
Zm00001d045829_P001	Maize	mitochondrion	11.03	38.34
Zm00001d052868_P001	Maize	cytosol, peroxisome, plasma membrane	7.15	34.32

Protein Annotations

EntrezGene:100795759	MapMan:11.2.2.2	MapMan:15.5.53.1	Gene3D:2.130.10.10	EMBL:ACUP02004930	InterPro:CTLH_C
ncoils:Coil	EnsemblPlantsGene:GLYMA_08G214600	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	UniProt:I1KVH4
InterPro:IPR001680	InterPro:IPR006594	InterPro:IPR006595	InterPro:IPR015943	InterPro:IPR017986	ProteinID:KRH44495.1
ProteinID:KRH44496.1	ProteinID:KRH44497.1	ProteinID:KRH44498.1	ProteinID:KRH44499.1	ProteinID:KRH44500.1	EnsemblPlants:KRH44501
ProteinID:KRH44501	ProteinID:KRH44501.1	InterPro:LisH	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PFscan:PS50896	PFscan:PS50897	PANTHER:PTHR44083	PANTHER:PTHR44083:SF2	InterPro:Quinoprotein_ADH-like_supfam
SMART:SM00320	SMART:SM00667	SMART:SM00668	SUPFAM:SSF50978	SUPFAM:SSF50998	SUPFAM:SSF75011
InterPro:Topless_fam	UniParc:UPI0002338F87	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:17342901..17351184

Molecular Weight (calculated)

124734.0 Da

IEP (calculated)

7.110

GRAVY (calculated)

-0.310

Length

1133 amino acids

Sequence
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEDEVHNGNW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDKHDR SKAVEILVKD
0101: LKVFATFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPNLKNSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCGQPNGA RAPSPANNPL LGALPKAGGF PPLGAHGPFQ PTPAPVPTPL AGWMSNPTTV AHAAVSGGGA IGLGAPSMPA ALKHPRTPPT NPSVDYPSGD
0301: SDHVAKRTRP MGISDEVNLP VNVLSATFPG HGQHSQAFNA PDDIPKTVVR TLNQGSSPMS MDFHPMQQSL LLVGTHVGDI ALWEVGSRER LVSRNFKVWD
0401: LSACSMPFQA ALVKDPGVSV NRVIWSPDGA LFGVAYSRHI VQIYSYHGGD EIRQHLEIDA HVGGVNDLAF SHPNKQLCVI TCGDDKTIKV WDAASGAKQY
0501: TFEGHEAPVY SVCPHYKENI QFIFSTALDG KIKAWLYDNL GSRVDYEAPG RWCTTMAYSA DGTRLFSCGT SKDGESSIVE WNESEGAVKR TYQGFRKRSL
0601: GVVQFDTTKN RFLAAGDDFS IKFWDMDNVQ LLTTVDADGG LPASPRIRFN KDGTLLAVSA NENGIKILAN GDGIRLLRTL ENSLYEASRA SEALTKPTIN
0701: PISAAAAAAT SAALAERASS VVAIAGMNGD TRNLGDVKPR ISEESNDKSK IWKLTEINEQ SQCRSLKLPE NVRVTKISRL IYTNSGNAIL ALASNAIHLL
0801: WKWQRNERNS SGKATATLQP QLWQPSSGIL MTNDIADSNP EDAVPCFALS KNDSYVMSAS GGKISLFNMM TFKTMTTFMP PPPAATFLAF HPQDNNIIAI
0901: GMDDSSIQIY NVRVDEVKSK LKGHTKRITG LAFSHVLNVL VSSGADAQIC VWNTDGWEKQ KSRFLQLPPG RTPPAQSDTR VQFHQDQIQF LVVHETQLAI
1001: YEATKLEGLK QWFPRDSSAP ISYATFSCDS QLVFASFLDA TICVFSASNL RLRCRINPSS YLPASVSSNI QPLVIAAHPQ EPNQFALGLS DGGVHVFEPL
1101: ESEGKWGVPP PIENGSASNV AATSVGPSDQ AQR

Best Arabidopsis Sequence Match ( AT1G80490.3 )
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEDEVHNGNW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDRHDR PKAVDILVKD
0101: LKVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPTLRTSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCRLPNDA RAPSPVNNPL LGSLPKAEGF PPLGAHGPFQ PTPSPVPTPL AGWMSSPSSV PHPAVSGGPI ALGAPSIQAA LKHPRTPPSN SAVDYPSGDS
0301: DHVSKRTRPM GISDEVSLGV NMLPMTFPGQ AHGHNQTFKA PDDLPKTVAR TLSQGSSPMS MDFHPIKQTL LLVGTNVGDI GLWEVGSRER LVQKTFKVWD
0401: LSKCSMPLQA ALVKEPVVSV NRVIWSPDGS LFGVAYSRHI VQLYSYHGGE DMRQHLEIDA HVGGVNDIAF STPNKQLCVT TCGDDKTIKV WDAATGVKRY
0501: TFEGHEAPVY SICPHYKENI QFIFSTALDG KIKAWLYDNM GSRVDYEAPG RWCTTMAYSA DGTRLFSCGT SKDGESFIVE WNESEGAVKR TYQGFHKRSL
0601: GVVQFDTTKN RYLAAGDDFS IKFWDMDTIQ LLTAIDADGG LQASPRIRFN KEGSLLAVSA NDNMIKVMAN SDGLRLLHTV ENLSSESSKP AINSIPMVER
0701: PASVVSIPGM NGDSRNMVDV KPVITEESND KSKVWKLTEV GEPSQCRSLR LPENMRVTKI SRLIFTNSGN AILALASNAI HLLWKWQRND RNATGKATAS
0801: LPPQQWQPAS GILMTNDVAE TNPEEAVPCF ALSKNDSYVM SASGGKISLF NMMTFKTMAT FMPPPPAATF LAFHPQDNNI IAIGMDDSTI QIYNVRVDEV
0901: KSKLKGHSKR ITGLAFSNVL NVLVSSGADA QLCVWNTDGW EKQKSKVLQI PQGRSTSSLS DTRVQFHQDQ VHFLVVHETQ LAIYETTKLE CMKQWPVRES
1001: AAPITHATFS CDSQLIYTSF MDATICVFSS ANLRLRCRVN PSAYLPASLS NSNVHPLVIA AHPQESNMFA VGLSDGGVHI FEPLESEGKW GVAPPPENGS
1101: ASAVTATPSV GASASDQPQR

Arabidopsis Description

TPR1Topless-related protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WV90]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.