CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 2
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH33863	Soybean	cytosol	23.19	95.27
KRG96753	Soybean	endoplasmic reticulum	95.22	95.22
KRG92932	Soybean	nucleus	89.91	89.91
KRH33861	Soybean	cytosol	64.96	87.17
Solyc01g100050.2.1	Tomato	nucleus	82.83	82.69
VIT_14s0060g01680.t01	Wine grape	cytosol	82.65	82.51
PGSC0003DMT400063603	Potato	cytosol	82.57	82.42
CDX80607	Canola	cytosol	76.73	77.62
Bra020567.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	72.39	76.74
CDX88252	Canola	cytosol	74.96	76.38
CDY25010	Canola	cytosol	75.13	76.35
CDY05552	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	74.87	76.15
Bra009930.1-P	Field mustard	cytosol	72.65	76.09
AT5G27030.2	Thale cress	cytosol, endoplasmic reticulum	75.84	75.57
Os01t0254100-01	Rice	nucleus	73.36	73.43
KXG32191	Sorghum	cytosol	73.1	73.42
Zm00001d040279_P012	Maize	cytosol	72.74	73.07
TraesCS3D01G179800.3	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	72.3	71.92
TraesCS3B01G204200.3	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	72.12	71.74
GSMUA_Achr11P...	Banana	cytosol	71.95	71.63
TraesCS3A01G173300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	71.95	71.57
GSMUA_Achr2P00320_001	Banana	cytosol	74.07	70.16
KRH30800	Soybean	mitochondrion	19.91	69.02
KRH03669	Soybean	nucleus	63.45	63.23
KRH20137	Soybean	endoplasmic reticulum	63.36	63.2
KRH44501	Soybean	cytosol	63.27	63.11
KRH47407	Soybean	cytosol	63.01	63.01
KRH23604	Soybean	endoplasmic reticulum	62.65	62.54
KRH09700	Soybean	cytosol	61.42	61.42
Zm00001d008338_P001	Maize	cytosol	58.67	47.66
KRH61732	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	43.1	45.94
KRH52398	Soybean	cytosol	42.57	45.64
KRH05196	Soybean	cytosol	20.97	43.65

Protein Annotations

EntrezGene:100800771	MapMan:11.2.2.2	MapMan:15.5.53.1	Gene3D:2.130.10.10	EMBL:ACUP02002117	InterPro:CTLH_C
ncoils:Coil	EnsemblPlantsGene:GLYMA_03G233400	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	UniProt:I1JR78
InterPro:IPR001680	InterPro:IPR006594	InterPro:IPR006595	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KRH68470
ProteinID:KRH68470	ProteinID:KRH68470.1	InterPro:LisH	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PFscan:PS50896	PFscan:PS50897	PANTHER:PTHR44083	PANTHER:PTHR44083:SF3	InterPro:Quino_amine_DH_bsu
InterPro:Quinoprotein_ADH-like_supfam	SMART:SM00320	SMART:SM00667	SMART:SM00668	SUPFAM:SSF101908	SUPFAM:SSF50969
SUPFAM:SSF50998	InterPro:Topless_fam	UniParc:UPI00023C1AE2	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:43411472..43419950

Molecular Weight (calculated)

124045.0 Da

IEP (calculated)

7.114

GRAVY (calculated)

-0.228

Length

1130 amino acids

Sequence
(BLAST)

0001: MTSLSRELVF LILQFLEEEK FKESVHKLEK ESGFFFNMKY FEEKVQAGEW EEVEKYLTGF TKVDDNRYSM KIFFEIRKQK YLEALDGQDK AKAVEILVGD
0101: LKVFSTFNEE LYKEITQLLT LTNFRENEQL SKYGDTKTAR GIMLIELKKL IEANPLFRDK LIFPTLRSSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFT
0201: DHTCTPPNGP LAPTPVNLPV AAVAKPAAYT SIGSHGPFPP AAATANTNAL AGWMANASAS SSVQAAVVTA STIPVPQNQV SILKRPRTPP TTPGMADYQN
0301: ADHEQLMKRL RPAPSVEEVS YPAARQASCS LDDLPRTVAM TLHQGSSVTS MDFHPSHPTL LLVGSNNGEI SLWELGFRDR LVSKPFKIWD ISACSLPFQA
0401: AMVKDSPISA SRVTWSLDGN FVGVAFTKHL IHLYAYTGSN ELAQRIEVDA HIGGVNDLAF AHLNKQLCIV TCGDDKLIKV WDIAGRKLFN FEGHEAAVYS
0501: ICPHHKESIQ FVFSTAIDGK IKAWLYDNMG SRVDYDAPGH WCTTMLYSAD GSRLFSCGTS KDGESFLVEW NESEGAIKRT YNGFRKKSTG VVQFDTTQNR
0601: FLAAGEDGQI KFWDMDNINL LTSTDAEGGL QTLPHLRFNK EGNLLAVTTA DKGFKILANA NGLRSLRTVE TPGFEALRSP IESAAVKASG SSAVNVSPVN
0701: CKVEKSSPVG PSPILNGVDT TGQNAEKPRT VEDGVDRAKP WQLSEIVDAV QCRLVTMPDS TDSSSKVVRL LYTNSGAGVL ALGSNGVQKL WKWARSEQNP
0801: NGKATASVVP QHWQPNSGLL MTNDVAGVNL DEAVPCIALS KNDSYVMSAC GGKVSLFNMM TFKVMTTFMP PPPASTFLAF HPQDNNIIAI GMEDSTIHIY
0901: NVRVDEVKSK LKGHQKRITG LAFSTCLNIL VSSGADAQLC VWSIDTWEKR KSVPIQLPAG KAPVGDTRVQ FHLDQIRLLV AHETQLAIYD ASKMDRIRQW
1001: VPQDVLAAPI SYAAYSCNSQ LIYATFCDGN TGVFDADSLR LRCRIALSTY FSPPAALSGN QSAYPVAIAA HPLEPNQFAV GLTDGSVKVI EPSESEGKWG
1101: TSPPMDNGIL NGRAASTSIT SNLTPDQAQR

Best Arabidopsis Sequence Match ( AT5G27030.1 )
(BLAST)

0001: MSSLSRELVF LILQFLEEEK FKESVHRLEK ESGFFFNTKY FDEKVLAGEW DDVETYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDRQEK AKAVEILVQD
0101: LRVFSTFNEE LYKEITQLLT LQNFRENEQL SKYGDTKTAR GIMLGELKKL IEANPLFRDK LMFPTLRSSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFT
0201: DHTCTLPNGP LAPSAVNQPV TTLTKPAAYP SLGPHVPFPP GPAAANAGAL ASWMAAASGA SAVQAAVVTP ALMPQPQNQM SILKRPRTPP ATPGIVDYQN
0301: PDHELMKRLR PAPSVEEVTY PAPRQQAPWS LEDLPTKAAL ALHQGSTVTS MEFYPMQNTL LLVGSATGEI TLWELAARER LVSRPFKIWD MSNCSHQFQA
0401: LIAKETPISV TRVAWSPDGN FIGVAFTKHL IQLYAFSGPN DLRQHTEIDA HVGAVNDLAF ANPNRQLCVI TCGDDKLIKV WDVSGRKHFT FEGHDAPVYS
0501: ICPHYKENIQ FIFSTAIDGK IKAWLYDNLG SRVDYDAPGK WCTRMLYSAD GTRLFSCGTS KDGDSFLVEW NESEGSIKRT YKEFQKKLAG VVQFDTSKNH
0601: FLAVGEDGQI KFWDMNNINV LTSTDAEGGL PALPHLRFNK DGNLLAVTTA DNGFKILANP AGFRSLRAME TPASETMRTP VDFKAVPGAP VASVNCKVER
0701: GSPVRHSQML NGVDPSKSRI DDSTDKPKSW QLAEILDPSQ CFQATLPDTA GSSTKVVQLL YTNSGAGILA LGSNGIQRLW KWVPNEQNPS GKATATVVPQ
0801: HWQPNSGLLM TNDVSGVNLE NAAPCIALSK NDSYVMSAAG GKVSLFNMMT FKVMTTFMPP PPASTFLAFH PQDNNVIAIG MEDSTIHIYN VRVDEVKSKL
0901: KGHQKRITGL AFSTALNILV SSGADAQICF WSIDTWEKRK SVAIQMPAGK AANGDTRVQF HVDQLRILVV HETQLAVFDA SKMECIRQWI PQDSLSAPIS
1001: SAVYACNSQL IYTTFRDGNI GVFDADSLRL RCRISPSAYL PQGNQGLSPL VVAAHPQDPN QFAVGLNDGS VKMMEPTEGE GKWGMIPPSE AINSPSTTSN
1101: QTPEQLQR

Arabidopsis Description

TPR3TOPLESS-related 3 [Source:UniProtKB/TrEMBL;Acc:F4K2T3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.