CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 2
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d040279_P012	Maize	cytosol	96.98	96.98
Os01t0254100-01	Rice	nucleus	90.49	90.17
HORVU3Hr1G035170.2	Barley	cytosol	88.0	87.61
TraesCS3D01G179800.3	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	88.0	87.15
TraesCS3A01G173300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	88.0	87.15
TraesCS3B01G204200.3	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	87.91	87.06
KRH33863	Soybean	cytosol	20.09	82.18
GSMUA_Achr11P...	Banana	cytosol	77.6	76.92
GSMUA_Achr2P00320_001	Banana	cytosol	79.82	75.27
KRG92932	Soybean	nucleus	74.76	74.42
Solyc01g100050.2.1	Tomato	nucleus	74.58	74.12
PGSC0003DMT400063603	Potato	cytosol	74.4	73.94
KRG96753	Soybean	endoplasmic reticulum	73.51	73.19
KRH68470	Soybean	nucleus	73.42	73.1
CDY67912	Canola	cytosol	38.13	72.22
AT3G16830.1	Thale cress	cytosol	72.09	71.71
KRH33861	Soybean	cytosol	53.6	71.62
Bra020567.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	66.93	70.64
Bra022181.1-P	Field mustard	cytosol	71.02	70.58
CDX80607	Canola	cytosol	70.04	70.55
CDX92100	Canola	cytosol	70.93	70.49
CDX95900	Canola	cytosol	70.93	70.25
CDY05552	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	68.98	69.85
CDY25010	Canola	cytosol	68.98	69.78
CDX88252	Canola	cytosol	68.71	69.7
Bra009930.1-P	Field mustard	cytosol	66.84	69.69
AT5G27030.2	Thale cress	cytosol, endoplasmic reticulum	68.98	68.43
CDY50500	Canola	cytosol	30.22	67.33
Bra021203.1-P	Field mustard	cytosol	71.56	64.14
KXG24503	Sorghum	cytosol	64.44	63.71
CDY50502	Canola	cytosol, plastid	71.56	63.29
EER92538	Sorghum	cytosol	61.78	61.78
KRH30800	Soybean	mitochondrion	15.56	53.68
VIT_04s0008g06360.t01	Wine grape	cytosol	3.29	48.05
VIT_04s0008g06370.t01	Wine grape	cytosol	9.78	30.9
KXG21335	Sorghum	cytosol	21.6	26.82

Protein Annotations

MapMan:11.2.2.2	MapMan:15.5.53.1	Gene3D:2.130.10.10	UniProt:A0A1B6Q2N9	InterPro:CTLH_C	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001680	InterPro:IPR006594	InterPro:IPR006595
InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KXG32191	ProteinID:KXG32191	ProteinID:KXG32191.1	InterPro:LisH
PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PFscan:PS50896	PFscan:PS50897
PANTHER:PTHR44083	PANTHER:PTHR44083:SF3	InterPro:Quinoprotein_ADH-like_supfam	SMART:SM00320	SMART:SM00667	SMART:SM00668
EnsemblPlantsGene:SORBI_3003G115900	SUPFAM:SSF50978	SUPFAM:SSF50998	InterPro:Topless_fam	UniParc:UPI00022070FF	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:-:10442509..10451309

Molecular Weight (calculated)

124376.0 Da

IEP (calculated)

7.246

GRAVY (calculated)

-0.354

Length

1125 amino acids

Sequence
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEEKVHAGEW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDRHDR AKAVDILVKD
0101: LKVFSTFNEE LYKEITQLLT LENFRENEQL SKYGDTKSAR SIMLVELKKL IEANPLFREK LVFPTLKASR LRTLINQSLN WQHQLCKNPR PNPDIKTLFT
0201: DHTCTPPNGA RASPVSVPLA AVPKAGAAYP PLTAHTPFQP PPPGPSLAGW MANATASSTV QSAVVAASSI PVPPNQAVSM LKRPTITDYQ SAESEQLMKR
0301: LRPGGHGVDE ATYPAPIPQP AWSVDDLPRT VACSFSHGSN VTSMDFHPTR HTLLLVGSSN GEFTLYEIGL REPLLSKPFK IRDINACSPQ FQNAVAKDPS
0401: ISINRVTWSP DGELIGVAFT KHLIHLHAYQ PPNETRHVLE IEAHSGGVND IAFSRPNKQL CVVTCGDDKL IKVWDMHGQK LFTFEGHEAP VYSICPHHKE
0501: SIQFIFSTSL DGKIKAWLYD NVGSRVDYEA PGKWCTTMLY SADGTRLFSC GTSKEGDSYL VEWNESEGSI KRTYSGFRKR SAGVAGVVQF DTAQNHILAA
0601: GEDNQIKFWD VDNNNMLICT DAEGGLPTLP RLRFNKEGNL LAVTTVDNGF KILANADGLR TLRALGSRPP FEAFRPQYEA SSMKVSGAPV VASISPNIGR
0701: IDHLDRNSPA KPSPILNGGD TASRSIDIKP RISEEKPDKA KPWELMEVLN PQQCRVATMP ETPDQARKVV RLLYTNSGVG LLALGSNAIQ RLWKWSRNEQ
0801: NPSGKATASV VPHHWQPNSG LVMTNDTADT NPEEAVPCIA LSKNDSYVMS ACGGKVSLFN MMTFKVMTTF MPPPPASTFL AFHPQDNNII AIGMEDSTIH
0901: IYNVRVDEVK TRLKGHQKRI TGLAFSTNLG VLVSSGADAQ LCVWTNDTWE KKRTVSIQMP AGKTPSGDTR VQFSSDQSHL LVVHETQLAI YDASKMERIY
1001: QWIPQDTLSA SISHASYSCN SQLVFAAFTD GNIGVFDAEN LRLRCRIAPS VINSNPPVHP LVVAAHPHEP NQFAVGLSDG SVKVLEPSES EGKWGTPAPA
1101: DNGIPNGKMP ASSATSNPAA DQVQR

Best Arabidopsis Sequence Match ( AT3G16830.1 )
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKESVHKLEQ ESGFFFNIKY FEEKALAGEW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDRNDR AKAVEILAKD
0101: LKVFATFNEE LYKEITQLLT LENFRENEQL SKYGDTKSAR SIMYTELKKL IEANPLFREK LAFPSFKASR LRTLINQSLN WQHQLCKNPR PNPDIKTLFL
0201: DHSCSPSNGA RALTPVNLPV AAVARPSNFV PLGVHGGPFQ SNPAPAPNAN ALAGWMANPN PSSSVPSGVV AASPFPMQPS QVNELKHPRA PSNSLGLMDY
0301: QSADHEQLMK RLRSAQTSNE VTYPAHSHPP ASLDDLPRNV VSTIRQGSVV ISMDFHPSHH TLLAVGCSSG EVTLWEVGSR EKVVTEPFKI WNMAACSVIF
0401: QGSIVKEPSI SVTRVAWSPD GNLLGVSFTK HLIHVYAYQG SDLRQHLEID AHVGCVNDLA FAHPNKQMCV VTCGDDKLIK VWDLSGKKLF TFEGHEAPVY
0501: SICPHQKENI QFIFSTALDG KIKAWLYDNV GSRVDYDAPG QWCTTMLYSA DGSRLFSCGT SKEGDSFLVE WNESEGALKR TYLGFRKKSA GVVQFDTTRN
0601: RFLAVGEDNQ IKFWNMDNTN LLTVVEAEGG LPNLPRLRFN KDGNLLAVTT ADNGFKILAN TDGLRTLRAF EARSFEASKA SIDMKVSTSA MASSISPAIG
0701: KIEHMDAGSP ARPTPIPNGI EAMSRTMEKP RNLDSVDKSK PLELTEIVDP TQCRQVTMPD SKDSVSKVAR LLYTNSGVGV LALGSNGVQR LWKWIRNEQN
0801: PTGKATASVT PQHWQPNSGL LMANDVPENP EGSVPCIALS KNDSYVMSAC GGKVSLFNMM TFKVMTTFMP PPPASTFLAF HPQDNNIIAI GMEDSSIHIY
0901: NVRVDEVKTK LKGHQKHITG LAFSTALNIL VSSGADAQLF FWTADSWEKK KSSAIQLPPG KAPVGDTRVQ FHNDQIQLLV SHETQLAIYD ASKMECIHKW
1001: VPQEALSSPI TSASYSCNSQ LVYASFADGN IAVFDAESLR LRCRIAPSAY MPQPTPNSAP IFPQVITAHP QEPNQLAVGL SDGSVKVIEP SELSRRWGVG
1101: VAAGSDKAGT ENGRPSSSSA ANNSSSDQIQ R

Arabidopsis Description

TPR2Topless-related protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRZ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.