CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 3
golgi 3
plasma membrane 3
endoplasmic reticulum 3
vacuole 3
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92100	Canola	cytosol	93.94	49.29
AT3G16830.1	Thale cress	cytosol	93.27	48.98
CDX95900	Canola	cytosol	92.93	48.59
Bra021203.1-P	Field mustard	cytosol	99.49	47.09
CDY50502	Canola	cytosol, plastid	99.66	46.54
CDY04683	Canola	mitochondrion	9.26	44.35
KXG32191	Sorghum	cytosol	72.22	38.13
Os01t0254100-01	Rice	nucleus	72.39	38.09
CDX80607	Canola	cytosol	71.04	37.78
Zm00001d040279_P012	Maize	cytosol	71.55	37.78
CDY25010	Canola	cytosol	70.54	37.68
CDY05552	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	70.03	37.44
TraesCS3B01G204200.3	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	71.55	37.41
TraesCS3D01G179800.3	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	71.55	37.41
TraesCS3A01G173300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	71.38	37.32
GSMUA_Achr11P...	Banana	cytosol	71.21	37.27
CDX88252	Canola	cytosol	69.53	37.24
GSMUA_Achr2P00320_001	Banana	cytosol	73.23	36.46
CDY36584	Canola	cytosol	68.01	36.14
CDY33387	Canola	cytosol	67.68	35.96
CDX81729	Canola	cytosol	67.51	35.9
CDX79383	Canola	cytosol	67.17	35.62
CDX67950	Canola	cytosol	67.34	35.59
CDY53312	Canola	cytosol	65.66	35.58
CDX82426	Canola	cytosol	66.16	34.69
CDY21881	Canola	cytosol	65.99	34.6
CDY20161	Canola	cytosol	65.99	34.6
CDX75851	Canola	cytosol	65.99	34.6
CDX79301	Canola	cytosol	9.93	27.19
Zm00001d008338_P001	Maize	cytosol	60.1	25.66
CDY12727	Canola	golgi	10.77	18.44
CDY38509	Canola	cytosol	15.49	12.01
CDX83225	Canola	cytosol	14.98	11.9
CDY50500	Canola	cytosol	2.36	2.77

Protein Annotations

MapMan:11.2.2.2	MapMan:15.5.53.1	Gene3D:2.130.10.10	GO:A0A078JR84	UniProt:A0A078JR84	EnsemblPlants:CDY67912
ProteinID:CDY67912	ProteinID:CDY67912.1	InterPro:CTLH_C	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
EnsemblPlantsGene:GSBRNA2T00067661001	InterPro:IPR001680	InterPro:IPR006594	InterPro:IPR006595	InterPro:IPR015943	InterPro:IPR017986
InterPro:LisH	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PFscan:PS50896
PFscan:PS50897	PANTHER:PTHR44083	PANTHER:PTHR44083:SF3	SMART:SM00320	SMART:SM00667	SMART:SM00668
SUPFAM:SSF50978	InterPro:Topless_fam	UniParc:UPI0004EDFED9	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

BnaA01g37020DBnaA01g37020D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JR84]

Coordinates

chrLK036644:+:5325..8151

Molecular Weight (calculated)

66723.3 Da

IEP (calculated)

7.450

GRAVY (calculated)

-0.395

Length

594 amino acids

Sequence
(BLAST)

001: MSSLSRELVF LILQFLDEEK FKESVHKLEQ ESGFYFNIKY FEEKALAGEW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDRNDR AKAVEILAKD
101: LKVFATFNEE LYKEITQLLT LENFRENEQL SKYGDTRSAR SIMYTELKKL IEANPLFREK LAFPSFKASR LRTLINQSLN WQHQLCKNPR PNPDIKTLFL
201: DHSCNAANGG ARAITPVNLP VAAVARPSNF VPLGVHGGPF QPSAAPAPNP NALAGWMANP HPSSSVPSGV VSASPFQLQQ PNQVNVLKHP RAPSNSLGLM
301: DYQNADHEQL MKRLRSAQTS NEVTYPAHPP HPSASLDDLP RNVVSTMRQG SVVMSMDFHP AHHTLLAVGC SSGEVSLWEV GSKEKIDTQP FKIWNMAACT
401: GIFQGTIVKE PSISVTRVAW SPDGNLIGVS FTKHLIHVYA YQGSELRQHL EIDAHVGCVN DLAFAHPNKQ MCVVTCGDDK LIKVWDLSGK KLYTFEGHDA
501: QVYSICPHQK ENIQFIFSTA LDGKIKAWLY DNVGSRVDYD APGQWCTTML YSADGSRLFS CGTSKEGDSF LVEWNESEGA LKRTYQGFRK KSNG

Best Arabidopsis Sequence Match ( AT1G15750.1 )
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEDEVHNGNW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDKHDR PKAVDILVKD
0101: LKVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPTLRNSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCGPPNGA RAPSPVNNPL LGGIPKAGGF PPLGAHGPFQ PTASPVPTPL AGWMSSPSSV PHPAVSAGAI ALGGPSIPAA LKHPRTPPTN ASLDYPSADS
0301: EHVSKRTRPM GISDEVNLGV NMLPMSFSGQ AHGHSPAFKA PDDLPKTVAR TLSQGSSPMS MDFHPIKQTL LLVGTNVGDI GLWEVGSRER LVQKTFKVWD
0401: LSKCSMPLQA ALVKEPVVSV NRVIWSPDGS LFGVAYSRHI VQLYSYHGGE DMRQHLEIDA HVGGVNDISF STPNKQLCVI TCGDDKTIKV WDAATGVKRH
0501: TFEGHEAPVY SVCPHYKENI QFIFSTALDG KIKAWLYDNM GSRVDYDAPG RWCTTMAYSA DGTRLFSCGT SKDGESFIVE WNESEGAVKR TYQGFHKRSL
0601: GVVQFDTTKN RYLAAGDDFS IKFWDMDAVQ LLTAIDGDGG LQASPRIRFN KEGSLLAVSG NENVIKIMAN SDGLRLLHTF ENISSESSKP AINSIAAAAA
0701: AAATSAGHAD RSANVVSIQG MNGDSRNMVD VKPVITEESN DKSKIWKLTE VSEPSQCRSL RLPENLRVAK ISRLIFTNSG NAILALASNA IHLLWKWQRN
0801: ERNATGKATA SLPPQQWQPA SGILMTNDVA ETNPEEAVPC FALSKNDSYV MSASGGKISL FNMMTFKTMA TFMPPPPAAT FLAFHPQDNN IIAIGMDDST
0901: IQIYNVRVDE VKSKLKGHSK RITGLAFSNV LNVLVSSGAD AQLCVWNTDG WEKQRSKVLP LPQGRPNSAP SDTRVQFHQD QAHFLVVHET QLAIYETTKL
1001: ECMKQWAVRE SLAPITHATF SCDSQLVYAS FMDATVCVFS SANLRLRCRV NPSAYLPASL SNSNVHPLVI AAHPQEPNMF AVGLSDGGVH IFEPLESEGK
1101: WGVAPPAENG SASGAPTAPS VGASASDQPQ R

Arabidopsis Description

TPLProtein TOPLESS [Source:UniProtKB/Swiss-Prot;Acc:Q94AI7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.