CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92100	Canola	cytosol	89.5	39.93
CDX95900	Canola	cytosol	89.7	39.88
CDY50502	Canola	cytosol, plastid	94.26	37.42
KXG32191	Sorghum	cytosol	67.33	30.22
Zm00001d040279_P012	Maize	cytosol	66.93	30.04
Os01t0254100-01	Rice	nucleus	66.34	29.67
GSMUA_Achr11P...	Banana	cytosol	65.74	29.25
TraesCS3D01G179800.3	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	65.54	29.14
TraesCS3A01G173300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	65.35	29.05
TraesCS3B01G204200.3	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	65.15	28.96
CDY05552	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	63.56	28.89
CDX80607	Canola	cytosol	63.76	28.83
CDY25010	Canola	cytosol	63.17	28.69
CDX88252	Canola	cytosol	62.97	28.67
GSMUA_Achr2P00320_001	Banana	cytosol	66.93	28.33
CDY53312	Canola	cytosol	53.47	24.64
CDY36584	Canola	cytosol	54.06	24.42
CDY33387	Canola	cytosol	53.86	24.33
CDX81729	Canola	cytosol	53.66	24.26
CDX67950	Canola	cytosol	53.07	23.84
CDX79383	Canola	cytosol	52.67	23.75
CDX75851	Canola	cytosol	50.1	22.33
CDX82426	Canola	cytosol	50.1	22.33
CDY20161	Canola	cytosol	49.9	22.24
CDY21881	Canola	cytosol	49.11	21.89
Zm00001d008338_P001	Maize	cytosol	53.66	19.48
CDX83225	Canola	cytosol	25.15	16.98
CDY38509	Canola	cytosol	25.74	16.97
CDX79301	Canola	cytosol	2.18	5.07
CDY12727	Canola	golgi	2.77	4.03
CDY67912	Canola	cytosol	2.77	2.36
HORVU6Hr1G036010.9	Barley	plastid	0.79	2.29
CDY04683	Canola	mitochondrion	0.0	0.0

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	GO:A0A078IHQ5	UniProt:A0A078IHQ5	EnsemblPlants:CDY50500	ProteinID:CDY50500
ProteinID:CDY50500.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00096897001	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44083
PANTHER:PTHR44083:SF3	SMART:SM00320	SUPFAM:SSF50978	InterPro:Topless_fam	UniParc:UPI0004EB95A9	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

BnaC01g44380DBnaC01g44380D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IHQ5]

Coordinates

chrLK032918:-:17954..20625

Molecular Weight (calculated)

54453.6 Da

IEP (calculated)

6.992

GRAVY (calculated)

-0.232

Length

505 amino acids

Sequence
(BLAST)

001: MAAALESSPE VGSSMKIMDG FATSSTAINL PRLRFNKEGN LLAVTTADNG FKILTNADGL RTLGAYEVLS YEASKAFIDM KVPTSAMVSS MSPASIGKVE
101: HMDTDSPARP TPVHKPLELT EIVDPTQCRQ VTMPDSKDSV SKVARLLYTN SGVGVLALEA NGVQRLWKWS RNEQNPTGKA TASVTPQHWQ PNSGLLMAND
201: VPENPETAVP CIALSKNDSY VKSACGGKVS LFNMMTFKVM TTFMPPPPAS TFLAFHPQDN NIIAIGMEDS SIHIYNVRVD EVKTKLKGHQ KHITGLAFST
301: ALNTLVSSGA DAQLFFWTAD SWEKKKSSVI QLPPGKAPVG DTRVQFHNDQ IHLLVSHETQ LAIYDASKME CIHKWVPQEA LSSPITSASY SCNSQLVYAS
401: FTDGNIAVFD AESLRLRCRI APSAYMPQPN SAPIIPQVIT AHPQEPNQLA VGLADGSVKV IEPSEASRRW GVGVAVTADK SGAENGRPSS SSAANNSTSD
501: HQIQR

Best Arabidopsis Sequence Match ( AT1G80490.2 )
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEDEVHNGNW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDRHDR PKAVDILVKD
0101: LKVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPTLRTSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCRLPNDA RAPSPVNNPL LGSLPKAEGF PPLGAHGPFQ PTPSPVPTPL AGWMSSPSSV PHPAVSGGPI ALGAPSIQAA LKHPRTPPSN SAVDYPSGDS
0301: DHVSKRTRPM GISDEVSLGV NMLPMTFPGQ AHGHNQTFKA PDDLPKTVAR TLSQGSSPMS MDFHPIKQTL LLVGTNVGDI GLWEVGSRER LVQKTFKVWD
0401: LSKCSMPLQA ALVKEPVVSV NRVIWSPDGS LFGVAYSRHI VQLYSYHGGE DMRQHLEIDA HVGGVNDIAF STPNKQLCVT TCGDDKTIKV WDAATGVKRY
0501: TFEGHEAPVY SICPHYKENI QFIFSTALDG KIKAWLYDNM GSRVDYEAPG RWCTTMAYSA DGTRLFSCGT SKDGESFIVE WNESEGAVKR TYQGFHKRSL
0601: GVVQFDTTKN RYLAAGDDFS IKFWDMDTIQ LLTAIDADGG LQASPRIRFN KEGSLLAVSA NDNMIKVMAN SDGLRLLHTV ENLSSESSKP AINSIPMVER
0701: PASVVSIPGM NGDSRNMVDV KPVITEESND KSKVWKLTEV GEPSQCRSLR LPENMRVTKI SRLIFTNSGN AILALASNAI HLLWKWQRND RNATGKATAS
0801: LPPQQWQPAS GILMTNDVAE TNPEEAVPCF ALSKNDSYVM SASGGKISLF NMMTFKTMAT FMPPPPAATF LAFHPQDNNI IAIGMDDSTI QIYNVRVDEV
0901: KSKLKGHSKR ITGLAFSNVL NVLVSSGADA QLCVWNTDGW EKQKSKVLQI PQGRSTSSLS DTRVQFHQDQ VHFLVVHETQ LAIYETTKLE CMKQWPVRES
1001: AAPITHATFS CDSQLIYTSF MDATICVFSS ANLRLRCRVN PSAYLPASLS NSNVHPLVIA AHPQESNMFA VGLSDGGVHI FEPLESEGKW GVAPPPENGS
1101: ASAVTATPSV GASASDQPQR

Arabidopsis Description

TPR1Topless-related protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WV90]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.