CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 4
plastid 1
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04683	Canola	mitochondrion	19.88	55.65
HORVU4Hr1G034270.1	Barley	cytosol	2.59	11.84
CDY67912	Canola	cytosol	18.44	10.77
CDX79301	Canola	cytosol	6.34	10.14
CDY05552	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	29.11	9.09
CDX88252	Canola	cytosol	28.53	8.93
CDY25010	Canola	cytosol	28.53	8.9
CDX80607	Canola	cytosol	28.53	8.86
CDY53312	Canola	cytosol	26.51	8.39
CDX81729	Canola	cytosol	26.51	8.24
CDY36584	Canola	cytosol	26.51	8.23
CDY33387	Canola	cytosol	26.51	8.23
CDX79383	Canola	cytosol	26.51	8.21
CDX67950	Canola	cytosol	26.51	8.19
CDX82426	Canola	cytosol	25.65	7.86
CDX75851	Canola	cytosol	25.36	7.77
CDY21881	Canola	cytosol	24.78	7.59
CDY20161	Canola	cytosol	24.78	7.59
CDX92100	Canola	cytosol	23.63	7.24
CDX95900	Canola	cytosol	23.63	7.22
CDY50502	Canola	cytosol, plastid	23.92	6.53
CDX83225	Canola	cytosol	11.24	5.21
CDY38509	Canola	cytosol	10.95	4.96
CDY50500	Canola	cytosol	4.03	2.77

Protein Annotations

EnsemblPlants:CDY12727	EnsemblPlantsGene:GSBRNA2T00070289001	GO:A0A078FIE8	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Topless_fam	PANTHER:PTHR44083	PANTHER:PTHR44083:SF3
ProteinID:CDY12727	ProteinID:CDY12727.1	SEG:seg	UniParc:UPI0004EF446B	UniProt:A0A078FIE8	MapMan:35.1

Description

BnaC04g29140DBnaC04g29140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FIE8]

Coordinates

chrLK032026:-:391747..396958

Molecular Weight (calculated)

38807.1 Da

IEP (calculated)

10.302

GRAVY (calculated)

-0.299

Length

347 amino acids

Sequence
(BLAST)

001: MELDYKKLCF PLFRNYISFV LNSPVNKRLC AMANVLVLFS DLQTGRSTST VEVRLLRFRE ARNIRRGGEL MGIDVLLLDS QILGELNCGS SGDVNAAEVR
101: CSLNRLQDVL QRPSQRWRRF QCLRRQKITK SQGWTYLIFA QEVSYISRAM ETFLFPSSGC HQKPKQPCLT GLHQKLSFLM VMFQICQDQV HQLCKTPRPD
201: PDIKTLFTDH TCAVPNGPLA PSSVNPPVTT LTKPTAFPSL GAHGPFPPGT AIAAANSANW TGLPKGVSVH AWEKDLCAKV ELGFMRRIMT TDATTTKKLG
301: TGAVRISNEE RVKKETSCAM WRRSDGGLSM WNWRGRSKGG FQPHSNG

Best Arabidopsis Sequence Match ( AT5G27030.1 )
(BLAST)

0001: MSSLSRELVF LILQFLEEEK FKESVHRLEK ESGFFFNTKY FDEKVLAGEW DDVETYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDRQEK AKAVEILVQD
0101: LRVFSTFNEE LYKEITQLLT LQNFRENEQL SKYGDTKTAR GIMLGELKKL IEANPLFRDK LMFPTLRSSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFT
0201: DHTCTLPNGP LAPSAVNQPV TTLTKPAAYP SLGPHVPFPP GPAAANAGAL ASWMAAASGA SAVQAAVVTP ALMPQPQNQM SILKRPRTPP ATPGIVDYQN
0301: PDHELMKRLR PAPSVEEVTY PAPRQQAPWS LEDLPTKAAL ALHQGSTVTS MEFYPMQNTL LLVGSATGEI TLWELAARER LVSRPFKIWD MSNCSHQFQA
0401: LIAKETPISV TRVAWSPDGN FIGVAFTKHL IQLYAFSGPN DLRQHTEIDA HVGAVNDLAF ANPNRQLCVI TCGDDKLIKV WDVSGRKHFT FEGHDAPVYS
0501: ICPHYKENIQ FIFSTAIDGK IKAWLYDNLG SRVDYDAPGK WCTRMLYSAD GTRLFSCGTS KDGDSFLVEW NESEGSIKRT YKEFQKKLAG VVQFDTSKNH
0601: FLAVGEDGQI KFWDMNNINV LTSTDAEGGL PALPHLRFNK DGNLLAVTTA DNGFKILANP AGFRSLRAME TPASETMRTP VDFKAVPGAP VASVNCKVER
0701: GSPVRHSQML NGVDPSKSRI DDSTDKPKSW QLAEILDPSQ CFQATLPDTA GSSTKVVQLL YTNSGAGILA LGSNGIQRLW KWVPNEQNPS GKATATVVPQ
0801: HWQPNSGLLM TNDVSGVNLE NAAPCIALSK NDSYVMSAAG GKVSLFNMMT FKVMTTFMPP PPASTFLAFH PQDNNVIAIG MEDSTIHIYN VRVDEVKSKL
0901: KGHQKRITGL AFSTALNILV SSGADAQICF WSIDTWEKRK SVAIQMPAGK AANGDTRVQF HVDQLRILVV HETQLAVFDA SKMECIRQWI PQDSLSAPIS
1001: SAVYACNSQL IYTTFRDGNI GVFDADSLRL RCRISPSAYL PQGNQGLSPL VVAAHPQDPN QFAVGLNDGS VKMMEPTEGE GKWGMIPPSE AINSPSTTSN
1101: QTPEQLQR

Arabidopsis Description

TPR3TOPLESS-related 3 [Source:UniProtKB/TrEMBL;Acc:F4K2T3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.