CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92100	Canola	cytosol	97.89	98.23
CDY67912	Canola	cytosol	48.59	92.93
AT3G16830.1	Thale cress	cytosol	92.17	92.57
CDY50500	Canola	cytosol	39.88	89.7
CDY50502	Canola	cytosol, plastid	93.49	83.49
KXG32191	Sorghum	cytosol	70.25	70.93
Os01t0254100-01	Rice	nucleus	69.89	70.33
Zm00001d040279_P012	Maize	cytosol	69.54	70.22
CDY05552	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	68.05	69.58
TraesCS3D01G179800.3	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	69.54	69.54
CDY25010	Canola	cytosol	68.05	69.51
TraesCS3B01G204200.3	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	69.45	69.45
CDX80607	Canola	cytosol	68.22	69.38
TraesCS3A01G173300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	69.28	69.28
CDX88252	Canola	cytosol	66.99	68.62
GSMUA_Achr11P...	Banana	cytosol	68.49	68.55
GSMUA_Achr2P00320_001	Banana	cytosol	70.51	67.14
CDY36584	Canola	cytosol	62.32	63.33
CDY33387	Canola	cytosol	61.97	62.97
CDY53312	Canola	cytosol	60.74	62.96
CDX81729	Canola	cytosol	61.8	62.85
CDX67950	Canola	cytosol	61.62	62.28
CDX79383	Canola	cytosol	61.27	62.14
CDX82426	Canola	cytosol	58.98	59.13
CDX75851	Canola	cytosol	58.89	59.05
CDY20161	Canola	cytosol	58.54	58.69
CDY21881	Canola	cytosol	58.27	58.43
Zm00001d008338_P001	Maize	cytosol	57.31	46.8
CDY04683	Canola	mitochondrion	4.84	44.35
CDX79301	Canola	cytosol	6.43	33.64
CDX83225	Canola	cytosol	18.93	28.74
CDY38509	Canola	cytosol	19.37	28.72
CDY12727	Canola	golgi	7.22	23.63

Protein Annotations

MapMan:11.2.2.2	MapMan:15.5.53.1	Gene3D:2.130.10.10	GO:A0A078E267	EnsemblPlants:CDX95900	ProteinID:CDX95900
ProteinID:CDX95900.1	InterPro:CTLH_C	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00101898001
InterPro:IPR001680	InterPro:IPR006594	InterPro:IPR006595	InterPro:IPR015943	InterPro:IPR017986	InterPro:LisH
PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PFscan:PS50896	PFscan:PS50897
PANTHER:PTHR44083	PANTHER:PTHR44083:SF3	InterPro:Quinoprotein_ADH-like_supfam	SMART:SM00320	SMART:SM00667	SMART:SM00668
SUPFAM:SSF50978	SUPFAM:SSF50998	InterPro:Topless_fam	UniParc:UPI0004EE5DFA	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

BnaC05g36510D

Coordinates

chrLK031891:-:1271514..1277166

Molecular Weight (calculated)

125409.0 Da

IEP (calculated)

7.546

GRAVY (calculated)

-0.360

Length

1136 amino acids

Sequence
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKESVHKLEQ ESGFYFNIKY FEEKALAGEW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDRNDR AKAVEILAKD
0101: LKVFATFNEE LYKEITQLLT LENFRENEQL SKYGDTKSAR NIMYTELKKL IEANPLFREK LAFPSFKASR LRTLINQSLN WQHQLCKNPR PNPDIKTLFL
0201: DHSCNAANGG ARALTPVNLP VAAVARPSNF VPLGVHGGPF QSTPAPAPNP NALAGWMGNP NPASSVPSGV VASASPFPMQ QPNQVNALKH PRPPSNSLGL
0301: MDYQNAADHD QLMRRLRSAQ NEVTYPSHSH PPSASLDDLP RNVVSTMRQG SVVMSMDFHP AHHTLLAVGG SSGEVSLWEV GSREKIVTEP FKIWNMSACS
0401: GVLQGTIVKE PSISVTRVAW SPDGNFIGVS FNKHLIHVYA YQGSDLRQHL EIEAHVGRVN DLAFAHPNKQ ICIVTCGDDK LIKVWDINGK KLYTFEGHEA
0501: SVYSICPHQK ENIQFIFSTA LDGKIKAWLY DNVGSRVDYD APGQWCTTML YSADGSRLFS CGTSKDGDSF LVEWNESEGA LKRTYLGFRK KSKGVVQFDT
0601: TRNRFLAVGE DNQIKFWDMD NTNMLTTAEA EGGLPSLPRL RFNKEGNLLA VSTADNGFKI LANADGLRTL RAYEARSHEA SKASIEMKVS TSAMVSALSP
0701: VVGKIEHMDT SSPARPTPIP NGIEAMSRSI EKPRNLESVV DKSKTLELTE IVDPTQCRQV TMPDSKDSVS KVARLLYTNS GVGVLALGAN GVQRLWKWSR
0801: NEQNPTGKAT ASVTPQHWQP NSGLLMANDV SENPESAVPC IALSKNDSYV MSACGGKVSL FNMMTFKVMT TFMPPPPAST FLAFHPQDNN IIAIGMEDSS
0901: IHIYNVRVDE VKTKLKGHQK HITGLAFSTA LNTLVSSGAD AQLFFWTADT WEKKKSSAIS LPPGKAPVGD TRVQFHNDQI HLLVSHETQL AIYDATKMEC
1001: IHKWVPQEAL SSPITSASYS CNSQLVYASF ADGNIAVFDA DSLRLRCRIA PSAYMPQPTP NSAPIIPQVI TTHPQEPNQL AVGLSDGSVK VIEPSEASRR
1101: WGVGVAVNAD KAGTENGRPS SSSAANNSSS DHQMQR

Best Arabidopsis Sequence Match ( AT3G16830.1 )
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKESVHKLEQ ESGFFFNIKY FEEKALAGEW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDRNDR AKAVEILAKD
0101: LKVFATFNEE LYKEITQLLT LENFRENEQL SKYGDTKSAR SIMYTELKKL IEANPLFREK LAFPSFKASR LRTLINQSLN WQHQLCKNPR PNPDIKTLFL
0201: DHSCSPSNGA RALTPVNLPV AAVARPSNFV PLGVHGGPFQ SNPAPAPNAN ALAGWMANPN PSSSVPSGVV AASPFPMQPS QVNELKHPRA PSNSLGLMDY
0301: QSADHEQLMK RLRSAQTSNE VTYPAHSHPP ASLDDLPRNV VSTIRQGSVV ISMDFHPSHH TLLAVGCSSG EVTLWEVGSR EKVVTEPFKI WNMAACSVIF
0401: QGSIVKEPSI SVTRVAWSPD GNLLGVSFTK HLIHVYAYQG SDLRQHLEID AHVGCVNDLA FAHPNKQMCV VTCGDDKLIK VWDLSGKKLF TFEGHEAPVY
0501: SICPHQKENI QFIFSTALDG KIKAWLYDNV GSRVDYDAPG QWCTTMLYSA DGSRLFSCGT SKEGDSFLVE WNESEGALKR TYLGFRKKSA GVVQFDTTRN
0601: RFLAVGEDNQ IKFWNMDNTN LLTVVEAEGG LPNLPRLRFN KDGNLLAVTT ADNGFKILAN TDGLRTLRAF EARSFEASKA SIDMKVSTSA MASSISPAIG
0701: KIEHMDAGSP ARPTPIPNGI EAMSRTMEKP RNLDSVDKSK PLELTEIVDP TQCRQVTMPD SKDSVSKVAR LLYTNSGVGV LALGSNGVQR LWKWIRNEQN
0801: PTGKATASVT PQHWQPNSGL LMANDVPENP EGSVPCIALS KNDSYVMSAC GGKVSLFNMM TFKVMTTFMP PPPASTFLAF HPQDNNIIAI GMEDSSIHIY
0901: NVRVDEVKTK LKGHQKHITG LAFSTALNIL VSSGADAQLF FWTADSWEKK KSSAIQLPPG KAPVGDTRVQ FHNDQIQLLV SHETQLAIYD ASKMECIHKW
1001: VPQEALSSPI TSASYSCNSQ LVYASFADGN IAVFDAESLR LRCRIAPSAY MPQPTPNSAP IFPQVITAHP QEPNQLAVGL SDGSVKVIEP SELSRRWGVG
1101: VAAGSDKAGT ENGRPSSSSA ANNSSSDQIQ R

Arabidopsis Description

TPR2Topless-related protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRZ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.