Factsheet for Zm00001d040279_P012

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG32191	Sorghum	cytosol	96.98	96.98
Os01t0254100-01	Rice	nucleus	89.96	89.64
HORVU3Hr1G035170.2	Barley	cytosol	87.82	87.43
TraesCS3D01G179800.3	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	88.0	87.15
TraesCS3A01G173300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	88.0	87.15
TraesCS3B01G204200.3	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	87.82	86.97
KRH33863	Soybean	cytosol	20.0	81.82
GSMUA_Achr11P...	Banana	cytosol	76.98	76.3
GSMUA_Achr2P00320_001	Banana	cytosol	79.82	75.27
KRG92932	Soybean	nucleus	74.31	73.98
Solyc01g100050.2.1	Tomato	nucleus	74.31	73.85
PGSC0003DMT400063603	Potato	cytosol	74.13	73.67
KRG96753	Soybean	endoplasmic reticulum	73.24	72.92
KRH68470	Soybean	nucleus	73.07	72.74
CDY67912	Canola	cytosol	37.78	71.55
KRH33861	Soybean	cytosol	53.42	71.38
AT3G16830.1	Thale cress	cytosol	71.56	71.18
CDX80607	Canola	cytosol	69.87	70.37
Bra020567.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	66.58	70.26
Bra022181.1-P	Field mustard	cytosol	70.31	69.88
CDX92100	Canola	cytosol	70.22	69.79
CDX95900	Canola	cytosol	70.22	69.54
CDX88252	Canola	cytosol	68.53	69.52
CDY25010	Canola	cytosol	68.71	69.51
Bra009930.1-P	Field mustard	cytosol	66.67	69.51
CDY05552	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	68.53	69.4
AT5G27030.2	Thale cress	cytosol, endoplasmic reticulum	68.8	68.25
CDY50500	Canola	cytosol	30.04	66.93
Bra021203.1-P	Field mustard	cytosol	70.93	63.59
CDY50502	Canola	cytosol, plastid	70.93	62.74
Zm00001d024523_P003	Maize	cytosol	63.91	62.36
Zm00001d028481_P017	Maize	cytosol	61.42	61.1
Zm00001d047897_P013	Maize	cytosol	61.42	61.1
Zm00001d008338_P001	Maize	cytosol	72.8	58.88
KRH30800	Soybean	mitochondrion	15.64	53.99
VIT_04s0008g06360.t01	Wine grape	cytosol	3.29	48.05
VIT_04s0008g06370.t01	Wine grape	cytosol	9.87	31.18
Zm00001d004623_P001	Maize	cytosol, plastid	7.2	30.0
Zm00001d050983_P001	Maize	cytosol	6.67	30.0
Zm00001d027915_P001	Maize	cytosol	7.73	28.06
Zm00001d052868_P001	Maize	cytosol, peroxisome, plasma membrane	5.42	25.85
Zm00001d045829_P001	Maize	mitochondrion	7.11	24.54

Protein Annotations

EntrezGene:103649954	MapMan:11.2.2.2	MapMan:15.5.53.1	Gene3D:2.130.10.10	UniProt:A0A1D6MPR3	InterPro:CTLH_C
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001680	InterPro:IPR006594	InterPro:IPR006595
InterPro:IPR015943	InterPro:IPR017986	InterPro:LisH	ProteinID:ONM31013.1	ProteinID:ONM31020.1	PFAM:PF00400
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PFscan:PS50896	PFscan:PS50897	PANTHER:PTHR44083
PANTHER:PTHR44083:SF3	SMART:SM00320	SMART:SM00667	SMART:SM00668	SUPFAM:SSF50978	InterPro:Topless_fam
UniParc:UPI0004DEAC88	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
EnsemblPlantsGene:Zm00001d040279	EnsemblPlants:Zm00001d040279_P012	EnsemblPlants:Zm00001d040279_T012	SEG:seg	:	:

Description

topless-related1 topless-related1

Coordinates

chr3:-:35510676..35520277

Molecular Weight (calculated)

124279.0 Da

IEP (calculated)

7.131

GRAVY (calculated)

-0.343

Length

1125 amino acids

Sequence
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEEKVHAGEW DEVERYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDRHDR AKAVDILVKD
0101: LKVFSTFNEE LYKEITQLLT LENFRENEQL SKYGDTKSAR SIMLVELKKL IEANPLFREK LVFPTLKASR LRTLINQSLN WQHQLCKNPR PNPDIKTLFT
0201: DHTCSPPNGA RASPVSVPLA AVPKAGAAYP PLTAHTPFQP PPGPSLAGWM ANAAASSSVQ SAVVAAASIP VPPNQAVSML KRPALTDYQS AESEQLMKRL
0301: RPGGHGIDEA TYPAPTPQPA WSVDDLPRTV ACSLSHGSNV TSMDFHPTRH TLLLVGSANG EFTLYEIGLR ETLLSKPFKI RDINACSPQF QNAVVKDSSI
0401: SINQVTWSPD GEMIGVAFTK HLIHLHGYQP PNETRHLLEI EAHSGGVNDI AFSRPNKQLC VVTCGDDKLI KVWDMHGHKL FTFEGHEAPV YSICPHHKES
0501: IQFIFSTSLD GKIKAWLYDN MGSRVDYDAP GKWCTTMLYS ADGTRLFSCG TSKEGDSYLV EWNESEGSIK RTYSGFRKRS AGVAGVVQFD TAQNHILAAG
0601: EDNHIKFWDV DNNNMLICTD AEGGLPALPR LRFNKEGNLL AVTTADNGFK ILANADGLRT LRALGSRPPF EAFRPQYEAS SMKVSGAPVV ASISPNIGRM
0701: DHLDRNSPAK PSPILNGGDT ASRSIDIKPR ISEEKPDKAK PWELMEVLNP QQCHVATMPE TPDQARKVVR LLYTNSGVGL LALGSNAIQR LWKWSRNEQN
0801: PSGKATASVV PHHWQPNSGL VMTNDTADTN PEEAVPCIAL SKNDSYVMSA CGGKVSLFNM MTFKVMTTFM PPPPASTFLA FHPQDNNIIA IGMEDSTIHI
0901: YNVRVDEVKT RLKGHQRRIT GLAFSTNLGI LVSSGADAQL CVWTNDTWEK KRTVSIQMPA GKTPSGDTRV QFSSDQSHLL VVHETQLAIY DASKMERIYQ
1001: WIPQDTLSAS ISHASYSCNS QLVFAAFTDG NLGVFDAENL RLRCRIAPSV INSNPPVHPL VVAAHPHEPN QFAVGLSDGS VKVLEPLESE GKWGAPAPAD
1101: NGIIPNGKTP ASSATSNPAA DQIQR

Best Arabidopsis Sequence Match ( AT3G16830.1 )
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKESVHKLEQ ESGFFFNIKY FEEKALAGEW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDRNDR AKAVEILAKD
0101: LKVFATFNEE LYKEITQLLT LENFRENEQL SKYGDTKSAR SIMYTELKKL IEANPLFREK LAFPSFKASR LRTLINQSLN WQHQLCKNPR PNPDIKTLFL
0201: DHSCSPSNGA RALTPVNLPV AAVARPSNFV PLGVHGGPFQ SNPAPAPNAN ALAGWMANPN PSSSVPSGVV AASPFPMQPS QVNELKHPRA PSNSLGLMDY
0301: QSADHEQLMK RLRSAQTSNE VTYPAHSHPP ASLDDLPRNV VSTIRQGSVV ISMDFHPSHH TLLAVGCSSG EVTLWEVGSR EKVVTEPFKI WNMAACSVIF
0401: QGSIVKEPSI SVTRVAWSPD GNLLGVSFTK HLIHVYAYQG SDLRQHLEID AHVGCVNDLA FAHPNKQMCV VTCGDDKLIK VWDLSGKKLF TFEGHEAPVY
0501: SICPHQKENI QFIFSTALDG KIKAWLYDNV GSRVDYDAPG QWCTTMLYSA DGSRLFSCGT SKEGDSFLVE WNESEGALKR TYLGFRKKSA GVVQFDTTRN
0601: RFLAVGEDNQ IKFWNMDNTN LLTVVEAEGG LPNLPRLRFN KDGNLLAVTT ADNGFKILAN TDGLRTLRAF EARSFEASKA SIDMKVSTSA MASSISPAIG
0701: KIEHMDAGSP ARPTPIPNGI EAMSRTMEKP RNLDSVDKSK PLELTEIVDP TQCRQVTMPD SKDSVSKVAR LLYTNSGVGV LALGSNGVQR LWKWIRNEQN
0801: PTGKATASVT PQHWQPNSGL LMANDVPENP EGSVPCIALS KNDSYVMSAC GGKVSLFNMM TFKVMTTFMP PPPASTFLAF HPQDNNIIAI GMEDSSIHIY
0901: NVRVDEVKTK LKGHQKHITG LAFSTALNIL VSSGADAQLF FWTADSWEKK KSSAIQLPPG KAPVGDTRVQ FHNDQIQLLV SHETQLAIYD ASKMECIHKW
1001: VPQEALSSPI TSASYSCNSQ LVYASFADGN IAVFDAESLR LRCRIAPSAY MPQPTPNSAP IFPQVITAHP QEPNQLAVGL SDGSVKVIEP SELSRRWGVG
1101: VAAGSDKAGT ENGRPSSSSA ANNSSSDQIQ R

Arabidopsis Description

TPR2Topless-related protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRZ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.