Factsheet for AT5G27030.2

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:

endoplasmic reticulum 4
golgi 3
extracellular 3
cytosol 2
vacuole 2
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum
Any Predictor:	cytosol, secretory
BaCelLo:	endoplasmic reticulum, extracellular, golgi
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra020567.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	84.57	89.96
CDY05552	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	88.01	89.83
CDX80607	Canola	cytosol	88.36	89.7
CDY25010	Canola	cytosol	87.92	89.66
CDX88252	Canola	cytosol	86.6	88.55
Bra009930.1-P	Field mustard	cytosol	83.69	87.95
KRH33863	Soybean	cytosol	20.02	82.55
VIT_14s0060g01680.t01	Wine grape	cytosol	76.45	76.59
KRG92932	Soybean	nucleus	75.93	76.19
KRG96753	Soybean	endoplasmic reticulum	75.84	76.11
KRH68470	Soybean	nucleus	75.57	75.84
Solyc01g100050.2.1	Tomato	nucleus	74.78	74.91
PGSC0003DMT400063603	Potato	cytosol	74.52	74.65
KRH33861	Soybean	cytosol	54.67	73.63
Os01t0254100-01	Rice	nucleus	68.78	69.09
KXG32191	Sorghum	cytosol	68.43	68.98
Zm00001d040279_P012	Maize	cytosol	68.25	68.8
AT3G16830.1	Thale cress	cytosol	68.17	68.35
TraesCS3D01G179800.3	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	68.17	68.05
TraesCS3B01G204200.3	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	67.99	67.87
TraesCS3A01G173300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	67.9	67.78
GSMUA_Achr11P...	Banana	cytosol	66.31	66.26
GSMUA_Achr2P00320_001	Banana	cytosol	68.69	65.3
AT1G80490.2	Thale cress	cytosol	60.49	61.25
AT1G15750.3	Thale cress	cytosol	59.79	59.95
AT3G15880.2	Thale cress	cytosol	58.99	58.84
KRH30800	Soybean	mitochondrion	15.87	55.21
Zm00001d008338_P001	Maize	cytosol	56.08	45.72
AT2G25420.4	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	19.66	29.85

Protein Annotations

MapMan:11.2.2.2	MapMan:15.5.53.1	Gene3D:2.130.10.10	EntrezGene:832761	ProteinID:AED93643.1	ArrayExpress:AT5G27030
EnsemblPlantsGene:AT5G27030	RefSeq:AT5G27030	TAIR:AT5G27030	RefSeq:AT5G27030-TAIR-G	EnsemblPlants:AT5G27030.2	TAIR:AT5G27030.2
Unigene:At.27881	InterPro:CTLH_C	UniProt:F4K2T3	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009653	GO:GO:0009790	GO:GO:0009791	GO:GO:0009987	GO:GO:0010072
InterPro:IPR001680	InterPro:IPR006594	InterPro:IPR006595	InterPro:IPR015943	InterPro:IPR017986	InterPro:LisH
RefSeq:NP_001190409.1	PFAM:PF00400	PO:PO:0000293	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PFscan:PS50896	PFscan:PS50897	PANTHER:PTHR44083	PANTHER:PTHR44083:SF3	InterPro:Quinoprotein_ADH-like_supfam	SMART:SM00320
SMART:SM00667	SMART:SM00668	SUPFAM:SSF50978	SUPFAM:SSF50998	Symbol:TPR3	InterPro:Topless_fam
UniParc:UPI0001E93188	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
SEG:seg	:	:	:	:	:

Description

TPR3TOPLESS-related 3 [Source:UniProtKB/TrEMBL;Acc:F4K2T3]

Coordinates

chr5:-:9508764..9515407

Molecular Weight (calculated)

125570.0 Da

IEP (calculated)

7.312

GRAVY (calculated)

-0.250

Length

1134 amino acids

Sequence
(BLAST)

0001: MSSLSRELVF LILQFLEEEK FKESVHRLEK ESGFFFNTKY FDEKVLAGEW DDVETYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDRQEK AKAVEILVQD
0101: LRVFSTFNEE LYKEITQLLT LQNFRENEQL SKYGDTKTAR GIMLGELKKL IEANPLFRDK LMFPTLRSSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFT
0201: DHTCTLPNGP LAPSAVNQPV TTLTKPAAYP SLGPHVPFPP GPAAANAGAL ASWMAAASGA SAVQAAVVTP ALMPQPQNQM SILKRPRTPP ATPGIVDYQN
0301: PDHELMKRLR PAPSVEEVTY PAPRQQAPWS LEDLPTKAAL ALHQGSTVTS MEFYPMQNTL LLVGSATGEI TLWELAARER LVSRPFKIWD MSNCSHQFQA
0401: LIAKETPISV TRVAWSPDGN FIGKLPVMHC WILIVCCLWS LVSVSYCAGV AFTKHLIQLY AFSGPNDLRQ HTEIDAHVGA VNDLAFANPN RQLCVITCGD
0501: DKLIKVWDVS GRKHFTFEGH DAPVYSICPH YKENIQFIFS TAIDGKIKAW LYDNLGSRVD YDAPGKWCTR MLYSADGTRL FSCGTSKDGD SFLVEWNESE
0601: GSIKRTYKEF QKKLAGVVQF DTSKNHFLAV GEDGQIKFWD MNNINVLTST DAEGGLPALP HLRFNKDGNL LAVTTADNGF KILANPAGFR SLRAMETPAS
0701: ETMRTPVDFK AVPGAPVASV NCKVERGSPV RHSQMLNGVD PSKSRIDDST DKPKSWQLAE ILDPSQCFQA TLPDTAGSST KVVQLLYTNS GAGILALGSN
0801: GIQRLWKWVP NEQNPSGKAT ATVVPQHWQP NSGLLMTNDV SGVNLENAAP CIALSKNDSY VMSAAGGKVS LFNMMTFKVM TTFMPPPPAS TFLAFHPQDN
0901: NVIAIGMEDS TIHIYNVRVD EVKSKLKGHQ KRITGLAFST ALNILVSSGA DAQICFWSID TWEKRKSVAI QMPAGKAANG DTRVQFHVDQ LRILVVHETQ
1001: LAVFDASKME CIRQWIPQDS LSAPISSAVY ACNSQLIYTT FRDGNIGVFD ADSLRLRCRI SPSAYLPQGN QGLSPLVVAA HPQDPNQFAV GLNDGSVKMM
1101: EPTEGEGKWG MIPPSEAINS PSTTSNQTPE QLQR

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.