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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • endoplasmic reticulum 3
  • golgi 3
  • extracellular 3
  • cytosol 2
  • vacuole 2
  • plasma membrane 2
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, plastid, secretory
BaCelLo:endoplasmic reticulum, extracellular, golgi
MultiLoc:cytosol
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY67912 Canola cytosol 48.98 93.27
CDX95900 Canola cytosol 92.57 92.17
CDX92100 Canola cytosol 92.04 91.96
Bra022181.1-P Field mustard cytosol 91.95 91.87
Bra021203.1-P Field mustard cytosol 93.72 84.46
CDY50502 Canola cytosol, plastid 93.9 83.49
KXG32191 Sorghum cytosol 71.71 72.09
Os01t0254100-01 Rice nucleus 71.53 71.66
Zm00001d040279_P012 Maize cytosol 71.18 71.56
TraesCS3D01G179800.3 Wheat cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 71.09 70.77
TraesCS3B01G204200.3 Wheat cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 70.91 70.6
TraesCS3A01G173300.1 Wheat cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 70.82 70.51
GSMUA_Achr11P... Banana cytosol 69.76 69.52
AT5G27030.2 Thale cress cytosol, endoplasmic reticulum 68.35 68.17
GSMUA_Achr2P00320_001 Banana cytosol 71.71 67.98
AT1G80490.2 Thale cress cytosol 62.07 62.68
AT1G15750.3 Thale cress cytosol 62.42 62.42
AT3G15880.2 Thale cress cytosol 60.12 59.81
Zm00001d008338_P001 Maize cytosol 58.36 47.45
AT2G25420.4 Thale cress cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 20.07 30.39
Protein Annotations
MapMan:11.2.2.2MapMan:15.5.53.1Gene3D:2.130.10.10EntrezGene:820936UniProt:A0A178VCB7ProteinID:AEE75871.1
ArrayExpress:AT3G16830EnsemblPlantsGene:AT3G16830RefSeq:AT3G16830TAIR:AT3G16830RefSeq:AT3G16830-TAIR-GEnsemblPlants:AT3G16830.1
TAIR:AT3G16830.1EMBL:AY074277Unigene:At.24033ProteinID:BAA95777.1InterPro:CTLH_Cncoils:Coil
GO:GO:0000003GO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0007275
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009653GO:GO:0009790GO:GO:0009791
GO:GO:0009987GO:GO:0010072InterPro:IPR001680InterPro:IPR006594InterPro:IPR006595InterPro:IPR015943
InterPro:IPR017986InterPro:LisHRefSeq:NP_188306.2ProteinID:OAP03869.1PFAM:PF00400PO:PO:0000005
PO:PO:0000013PO:PO:0000037PO:PO:0000084PO:PO:0000230PO:PO:0000293PO:PO:0001054
PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007064PO:PO:0007095
PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616
PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025
PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047
PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022
PO:PO:0025281ScanProsite:PS00678PFscan:PS50082PFscan:PS50294PFscan:PS50896PFscan:PS50897
PANTHER:PTHR44083PANTHER:PTHR44083:SF3UniProt:Q9LRZ0InterPro:Quinoprotein_ADH-like_supfamSMART:SM00320SMART:SM00667
SMART:SM00668SUPFAM:SSF50978SUPFAM:SSF50998Symbol:TPR2InterPro:Topless_famUniParc:UPI0000163406
InterPro:WD40/YVTN_repeat-like_dom_sfInterPro:WD40_repeatInterPro:WD40_repeat_CSInterPro:WD40_repeat_domInterPro:WD40_repeat_dom_sfSEG:seg
Description
TPR2Topless-related protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRZ0]
Coordinates
chr3:+:5731519..5737854
Molecular Weight (calculated)
124766.0 Da
IEP (calculated)
7.284
GRAVY (calculated)
-0.313
Length
1131 amino acids
Sequence
(BLAST)
0001: MSSLSRELVF LILQFLDEEK FKESVHKLEQ ESGFFFNIKY FEEKALAGEW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDRNDR AKAVEILAKD
0101: LKVFATFNEE LYKEITQLLT LENFRENEQL SKYGDTKSAR SIMYTELKKL IEANPLFREK LAFPSFKASR LRTLINQSLN WQHQLCKNPR PNPDIKTLFL
0201: DHSCSPSNGA RALTPVNLPV AAVARPSNFV PLGVHGGPFQ SNPAPAPNAN ALAGWMANPN PSSSVPSGVV AASPFPMQPS QVNELKHPRA PSNSLGLMDY
0301: QSADHEQLMK RLRSAQTSNE VTYPAHSHPP ASLDDLPRNV VSTIRQGSVV ISMDFHPSHH TLLAVGCSSG EVTLWEVGSR EKVVTEPFKI WNMAACSVIF
0401: QGSIVKEPSI SVTRVAWSPD GNLLGVSFTK HLIHVYAYQG SDLRQHLEID AHVGCVNDLA FAHPNKQMCV VTCGDDKLIK VWDLSGKKLF TFEGHEAPVY
0501: SICPHQKENI QFIFSTALDG KIKAWLYDNV GSRVDYDAPG QWCTTMLYSA DGSRLFSCGT SKEGDSFLVE WNESEGALKR TYLGFRKKSA GVVQFDTTRN
0601: RFLAVGEDNQ IKFWNMDNTN LLTVVEAEGG LPNLPRLRFN KDGNLLAVTT ADNGFKILAN TDGLRTLRAF EARSFEASKA SIDMKVSTSA MASSISPAIG
0701: KIEHMDAGSP ARPTPIPNGI EAMSRTMEKP RNLDSVDKSK PLELTEIVDP TQCRQVTMPD SKDSVSKVAR LLYTNSGVGV LALGSNGVQR LWKWIRNEQN
0801: PTGKATASVT PQHWQPNSGL LMANDVPENP EGSVPCIALS KNDSYVMSAC GGKVSLFNMM TFKVMTTFMP PPPASTFLAF HPQDNNIIAI GMEDSSIHIY
0901: NVRVDEVKTK LKGHQKHITG LAFSTALNIL VSSGADAQLF FWTADSWEKK KSSAIQLPPG KAPVGDTRVQ FHNDQIQLLV SHETQLAIYD ASKMECIHKW
1001: VPQEALSSPI TSASYSCNSQ LVYASFADGN IAVFDAESLR LRCRIAPSAY MPQPTPNSAP IFPQVITAHP QEPNQLAVGL SDGSVKVIEP SELSRRWGVG
1101: VAAGSDKAGT ENGRPSSSSA ANNSSSDQIQ R
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.