Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- cytosol 2
- nucleus 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
19621931
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG32191 | Sorghum | cytosol | 90.17 | 90.49 |
| Zm00001d040279_P012 | Maize | cytosol | 89.64 | 89.96 |
| HORVU3Hr1G035170.2 | Barley | cytosol | 88.57 | 88.5 |
| TraesCS3D01G179800.3 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 88.84 | 88.29 |
| TraesCS3B01G204200.3 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 88.84 | 88.29 |
| TraesCS3A01G173300.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 88.75 | 88.2 |
| KRH33863 | Soybean | cytosol | 20.11 | 82.55 |
| GSMUA_Achr11P... | Banana | cytosol | 77.5 | 77.09 |
| GSMUA_Achr2P00320_001 | Banana | cytosol | 80.16 | 75.86 |
| Solyc01g100050.2.1 | Tomato | nucleus | 75.64 | 75.44 |
| PGSC0003DMT400063603 | Potato | cytosol | 75.47 | 75.27 |
| KRG92932 | Soybean | nucleus | 75.02 | 74.96 |
| KRG96753 | Soybean | endoplasmic reticulum | 73.61 | 73.54 |
| KRH68470 | Soybean | nucleus | 73.43 | 73.36 |
| KRH33861 | Soybean | cytosol | 54.21 | 72.68 |
| CDY67912 | Canola | cytosol | 38.09 | 72.39 |
| AT3G16830.1 | Thale cress | cytosol | 71.66 | 71.53 |
| Bra020567.1-P | Field mustard | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 67.4 | 71.39 |
| CDX80607 | Canola | cytosol | 69.97 | 70.73 |
| CDY05552 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 69.35 | 70.48 |
| CDY25010 | Canola | cytosol | 69.35 | 70.41 |
| Bra009930.1-P | Field mustard | cytosol | 67.14 | 70.25 |
| Bra022181.1-P | Field mustard | cytosol | 70.24 | 70.05 |
| CDX88252 | Canola | cytosol | 68.73 | 69.97 |
| CDX92100 | Canola | cytosol | 70.15 | 69.96 |
| CDX95900 | Canola | cytosol | 70.33 | 69.89 |
| AT5G27030.2 | Thale cress | cytosol, endoplasmic reticulum | 69.09 | 68.78 |
| CDY50500 | Canola | cytosol | 29.67 | 66.34 |
| Os08t0162100-01 | Rice | nucleus | 63.77 | 63.55 |
| Bra021203.1-P | Field mustard | cytosol | 70.59 | 63.51 |
| CDY50502 | Canola | cytosol, plastid | 70.59 | 62.66 |
| Os03t0254700-01 | Rice | cytosol | 61.91 | 61.69 |
| Zm00001d008338_P001 | Maize | cytosol | 68.47 | 55.57 |
| KRH30800 | Soybean | mitochondrion | 15.5 | 53.68 |
| VIT_04s0008g06360.t01 | Wine grape | cytosol | 3.28 | 48.05 |
| VIT_04s0008g06370.t01 | Wine grape | cytosol | 10.1 | 32.02 |
Protein Annotations
| MapMan:11.2.2.2 | MapMan:15.5.53.1 | Gene3D:2.130.10.10 | EntrezGene:4327709 | PDB:4ZHE | PDB:5C6Q |
| PDB:5C6V | PDB:5C7E | PDB:5C7F | PDB:5J9K | PDB:5JA5 | PDB:5JGC |
| PDB:5JHP | EMBL:AB638271 | ProteinID:BAD81067.1 | ProteinID:BAF04530.1 | ProteinID:BAS71375.1 | ProteinID:BAS71376.1 |
| InterPro:CTLH_C | ProteinID:EEE54253.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001680 |
| InterPro:IPR006594 | InterPro:IPR006595 | InterPro:IPR015943 | InterPro:IPR017986 | InterPro:LisH | EnsemblPlantsGene:Os01g0254100 |
| EnsemblPlants:Os01t0254100-01 | PFAM:PF00400 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PFscan:PS50896 |
| PFscan:PS50897 | PANTHER:PTHR44083 | PANTHER:PTHR44083:SF3 | UniProt:Q5NBT9 | InterPro:Quinoprotein_ADH-like_supfam | SMART:SM00320 |
| SMART:SM00667 | SMART:SM00668 | SUPFAM:SSF50978 | SUPFAM:SSF50998 | InterPro:Topless_fam | UniParc:UPI000049E651 |
| InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | RefSeq:XP_015617818.1 |
| SEG:seg | : | : | : | : | : |
Description
TOPLESS-RELATED PROTEIN 1Similar to CTV.2. (Os01t0254100-01);Similar to Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; Nitrous oxide reductase, N-terminal; WD40-like; Quinonprotein alcohol dehydrogenase-like. (Os01t0254100-02)
Coordinates
chr1:-:8420995..8430280
Molecular Weight (calculated)
125102.0 Da
IEP (calculated)
7.183
GRAVY (calculated)
-0.348
Length
1129 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEEKVHAGEW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDRHDR AKAVDILVKD
0101: LKVFSTFNEE LYKEITQLLT LENFRENEQL SKYGDTKSAR SIMLIELKKL IEANPLFREK LVFPTLKASR LRTLINQSLN WQHQLCKNPR PNPDIKTLFT
0201: DHTCTPPNGA RASPVSVPLA AVPKAGGTYP PLTAHTPFQP PPAGPSLAGW MANAAAATSS VPSAVVAASS LPVPPNQAVP IMKRPTITDY QSAESEQLMK
0301: RLRPSGHGVD EATYPAPIPQ PLWSVEDLPR TVACTLSQGS SVTSMDFHPT RHTLLLVGST NGEITLWEVG MRERLFSKPF KIWDIQACSP QFQSVAKESS
0401: ISINRVTWSP DGDLIGVAFA KHLIHLHAYQ QPNETRQVLE IDAHSGAVND IAFSRPNKQL CVVTCGDDRL IKVWDMHGQK LFSFEGHEAP VYSICPHHKE
0501: SIQFIFSTSL DGKIKAWLYD HMGSRVDYDA PGKWCTTMLY SADGTRLFSC GTSKDGDSYL VEWNESEGSI KRTYSGFRKK SAGVGVVQFD TAQNHILAAG
0601: EDNQIKFWDV DNTTMLSSTE ADGGLPGLPR LRFNKEGNLL AVTTVDNGFK ILANADGLRT LRAFGNRPFE AFRSQYEASS MKVSGAPVVA GISPNIGRMD
0701: HIDRNSPAKP SPIMNGGDPA SRSIDIKPRI SEERPDKAKP WELMEVLNAQ QCRVATMPET PDQASKVVRL LYTNSGVGLL ALGSNAIQRL WKWARNDQNP
0801: SGKATANVVP QHWQPNSGLV MQNDTADTNP EDAVPCIALS KNDSYVMSAC GGKVSLFNMM TFKVMTTFMP PPPASTFLAF HPQDNNIIAI GMEDSTIHIY
0901: NVRVDEVKTR LKGHQRRITG LAFSNNLQIL VSSGADAQLC VWATDTWEKK KSVAIQMPAG KTPSGDTWVQ FNSDWSRLLV VHETQLAIYD ASKMERIYQW
1001: IPQDALSAPI SHASYSRNSQ LVFAAFTDGN IGIFDVENLR LRCRIAPPAY LSSAAINSNP SVYPLVVAAH PQESNQFAVG LSDGSVKVIE PLESEGKWGT
1101: TPPTENGVPN GRTSTSSATS NPAADQIQR
0101: LKVFSTFNEE LYKEITQLLT LENFRENEQL SKYGDTKSAR SIMLIELKKL IEANPLFREK LVFPTLKASR LRTLINQSLN WQHQLCKNPR PNPDIKTLFT
0201: DHTCTPPNGA RASPVSVPLA AVPKAGGTYP PLTAHTPFQP PPAGPSLAGW MANAAAATSS VPSAVVAASS LPVPPNQAVP IMKRPTITDY QSAESEQLMK
0301: RLRPSGHGVD EATYPAPIPQ PLWSVEDLPR TVACTLSQGS SVTSMDFHPT RHTLLLVGST NGEITLWEVG MRERLFSKPF KIWDIQACSP QFQSVAKESS
0401: ISINRVTWSP DGDLIGVAFA KHLIHLHAYQ QPNETRQVLE IDAHSGAVND IAFSRPNKQL CVVTCGDDRL IKVWDMHGQK LFSFEGHEAP VYSICPHHKE
0501: SIQFIFSTSL DGKIKAWLYD HMGSRVDYDA PGKWCTTMLY SADGTRLFSC GTSKDGDSYL VEWNESEGSI KRTYSGFRKK SAGVGVVQFD TAQNHILAAG
0601: EDNQIKFWDV DNTTMLSSTE ADGGLPGLPR LRFNKEGNLL AVTTVDNGFK ILANADGLRT LRAFGNRPFE AFRSQYEASS MKVSGAPVVA GISPNIGRMD
0701: HIDRNSPAKP SPIMNGGDPA SRSIDIKPRI SEERPDKAKP WELMEVLNAQ QCRVATMPET PDQASKVVRL LYTNSGVGLL ALGSNAIQRL WKWARNDQNP
0801: SGKATANVVP QHWQPNSGLV MQNDTADTNP EDAVPCIALS KNDSYVMSAC GGKVSLFNMM TFKVMTTFMP PPPASTFLAF HPQDNNIIAI GMEDSTIHIY
0901: NVRVDEVKTR LKGHQRRITG LAFSNNLQIL VSSGADAQLC VWATDTWEKK KSVAIQMPAG KTPSGDTWVQ FNSDWSRLLV VHETQLAIYD ASKMERIYQW
1001: IPQDALSAPI SHASYSRNSQ LVFAAFTDGN IGIFDVENLR LRCRIAPPAY LSSAAINSNP SVYPLVVAAH PQESNQFAVG LSDGSVKVIE PLESEGKWGT
1101: TPPTENGVPN GRTSTSSATS NPAADQIQR
0001: MSSLSRELVF LILQFLDEEK FKESVHKLEQ ESGFFFNIKY FEEKALAGEW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDRNDR AKAVEILAKD
0101: LKVFATFNEE LYKEITQLLT LENFRENEQL SKYGDTKSAR SIMYTELKKL IEANPLFREK LAFPSFKASR LRTLINQSLN WQHQLCKNPR PNPDIKTLFL
0201: DHSCSPSNGA RALTPVNLPV AAVARPSNFV PLGVHGGPFQ SNPAPAPNAN ALAGWMANPN PSSSVPSGVV AASPFPMQPS QVNELKHPRA PSNSLGLMDY
0301: QSADHEQLMK RLRSAQTSNE VTYPAHSHPP ASLDDLPRNV VSTIRQGSVV ISMDFHPSHH TLLAVGCSSG EVTLWEVGSR EKVVTEPFKI WNMAACSVIF
0401: QGSIVKEPSI SVTRVAWSPD GNLLGVSFTK HLIHVYAYQG SDLRQHLEID AHVGCVNDLA FAHPNKQMCV VTCGDDKLIK VWDLSGKKLF TFEGHEAPVY
0501: SICPHQKENI QFIFSTALDG KIKAWLYDNV GSRVDYDAPG QWCTTMLYSA DGSRLFSCGT SKEGDSFLVE WNESEGALKR TYLGFRKKSA GVVQFDTTRN
0601: RFLAVGEDNQ IKFWNMDNTN LLTVVEAEGG LPNLPRLRFN KDGNLLAVTT ADNGFKILAN TDGLRTLRAF EARSFEASKA SIDMKVSTSA MASSISPAIG
0701: KIEHMDAGSP ARPTPIPNGI EAMSRTMEKP RNLDSVDKSK PLELTEIVDP TQCRQVTMPD SKDSVSKVAR LLYTNSGVGV LALGSNGVQR LWKWIRNEQN
0801: PTGKATASVT PQHWQPNSGL LMANDVPENP EGSVPCIALS KNDSYVMSAC GGKVSLFNMM TFKVMTTFMP PPPASTFLAF HPQDNNIIAI GMEDSSIHIY
0901: NVRVDEVKTK LKGHQKHITG LAFSTALNIL VSSGADAQLF FWTADSWEKK KSSAIQLPPG KAPVGDTRVQ FHNDQIQLLV SHETQLAIYD ASKMECIHKW
1001: VPQEALSSPI TSASYSCNSQ LVYASFADGN IAVFDAESLR LRCRIAPSAY MPQPTPNSAP IFPQVITAHP QEPNQLAVGL SDGSVKVIEP SELSRRWGVG
1101: VAAGSDKAGT ENGRPSSSSA ANNSSSDQIQ R
0101: LKVFATFNEE LYKEITQLLT LENFRENEQL SKYGDTKSAR SIMYTELKKL IEANPLFREK LAFPSFKASR LRTLINQSLN WQHQLCKNPR PNPDIKTLFL
0201: DHSCSPSNGA RALTPVNLPV AAVARPSNFV PLGVHGGPFQ SNPAPAPNAN ALAGWMANPN PSSSVPSGVV AASPFPMQPS QVNELKHPRA PSNSLGLMDY
0301: QSADHEQLMK RLRSAQTSNE VTYPAHSHPP ASLDDLPRNV VSTIRQGSVV ISMDFHPSHH TLLAVGCSSG EVTLWEVGSR EKVVTEPFKI WNMAACSVIF
0401: QGSIVKEPSI SVTRVAWSPD GNLLGVSFTK HLIHVYAYQG SDLRQHLEID AHVGCVNDLA FAHPNKQMCV VTCGDDKLIK VWDLSGKKLF TFEGHEAPVY
0501: SICPHQKENI QFIFSTALDG KIKAWLYDNV GSRVDYDAPG QWCTTMLYSA DGSRLFSCGT SKEGDSFLVE WNESEGALKR TYLGFRKKSA GVVQFDTTRN
0601: RFLAVGEDNQ IKFWNMDNTN LLTVVEAEGG LPNLPRLRFN KDGNLLAVTT ADNGFKILAN TDGLRTLRAF EARSFEASKA SIDMKVSTSA MASSISPAIG
0701: KIEHMDAGSP ARPTPIPNGI EAMSRTMEKP RNLDSVDKSK PLELTEIVDP TQCRQVTMPD SKDSVSKVAR LLYTNSGVGV LALGSNGVQR LWKWIRNEQN
0801: PTGKATASVT PQHWQPNSGL LMANDVPENP EGSVPCIALS KNDSYVMSAC GGKVSLFNMM TFKVMTTFMP PPPASTFLAF HPQDNNIIAI GMEDSSIHIY
0901: NVRVDEVKTK LKGHQKHITG LAFSTALNIL VSSGADAQLF FWTADSWEKK KSSAIQLPPG KAPVGDTRVQ FHNDQIQLLV SHETQLAIYD ASKMECIHKW
1001: VPQEALSSPI TSASYSCNSQ LVYASFADGN IAVFDAESLR LRCRIAPSAY MPQPTPNSAP IFPQVITAHP QEPNQLAVGL SDGSVKVIEP SELSRRWGVG
1101: VAAGSDKAGT ENGRPSSSSA ANNSSSDQIQ R
Arabidopsis Description
TPR2Topless-related protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRZ0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.