Factsheet for Os08t0162100-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

nucleus: 22136599

gfp PMID: 22136599 doi

A Yoshida, Y Ohmori, H Kitano, F Taguchi-Shiobara, HY Hirano

Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Hongo, Bunkyo-ku, Tokyo 113-8657, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G293500.1	Wheat	golgi	92.85	92.44
TraesCS7A01G296100.6	Wheat	cytosol	92.76	92.36
TraesCS7B01G189300.1	Wheat	cytosol	92.59	92.18
HORVU7Hr1G066930.5	Barley	cytosol	92.59	92.18
KXG24503	Sorghum	cytosol	92.41	92.0
Zm00001d024523_P003	Maize	cytosol	91.97	90.37
GSMUA_Achr4P12340_001	Banana	cytosol	85.17	84.8
GSMUA_Achr4P11600_001	Banana	cytosol	84.91	84.53
GSMUA_Achr4P05650_001	Banana	cytosol	84.38	84.38
GSMUA_Achr1P10830_001	Banana	cytosol	82.97	82.31
GSMUA_Achr1P15450_001	Banana	cytosol	59.49	82.0
GSMUA_Achr4P04560_001	Banana	cytosol	82.7	80.22
VIT_16s0039g02410.t01	Wine grape	cytosol	79.79	79.65
Solyc08g076030.2.1	Tomato	nucleus	75.64	75.51
Os03t0254700-01	Rice	cytosol	68.23	68.23
Os01t0254100-01	Rice	nucleus	63.55	63.77
GSMUA_AchrUn_...	Banana	cytosol	61.78	61.24

Protein Annotations

MapMan:11.2.2.2	MapMan:15.5.53.1	Gene3D:2.130.10.10	EMBL:AB638269	ProteinID:BAC99788.1	ProteinID:BAF22969.1
ProteinID:BAT03947.1	ProteinID:BAT03948.1	InterPro:CTLH_C	ProteinID:EAZ41606.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001680	InterPro:IPR006594	InterPro:IPR006595	InterPro:IPR015943	InterPro:IPR017986	InterPro:LisH
EnsemblPlantsGene:Os08g0162100	EnsemblPlants:Os08t0162100-01	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PFscan:PS50896	PFscan:PS50897	PANTHER:PTHR44083	PANTHER:PTHR44083:SF5	UniProt:Q0J7U6	SMART:SM00320
SMART:SM00667	SMART:SM00668	SUPFAM:SSF117289	SUPFAM:SSF50978	InterPro:Topless_fam	UniParc:UPI0000004734
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

ABERRANT SPIKELET AND PANICLE 1Transcriptional co-repressor, Regulation of meristem fate (Os08t0162100-01);Similar to predicted protein. (Os08t0162100-02)

Coordinates

chr8:+:3667092..3675772

Molecular Weight (calculated)

124785.0 Da

IEP (calculated)

7.297

GRAVY (calculated)

-0.304

Length

1133 amino acids

Sequence
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESAFYFNMKH FEDLVQGGEW DEVEKYLSGF TKVEDNRYSM KIFFEIRKQK YLEALDRHDR AKAVEILVKD
0101: LKVFASFNEE LFKEITQLLT LENFRQNEQL SKYGDTKSAR NIMLMELKKL IEANPLFRDK LNFPPFKVSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFT
0201: DHSCAAPTNG ARAPPPANGP LVGPIPKSAA FPPMGAHAPF QPVVSPSPNA IAGWMTNANP SLPHAAVAQG PPGLVQPPNT AAFLKHPRTP TSAPAIDYQS
0301: ADSEHLMKRM RVGQPDEVSF SGASHPANIY TQDDLPKQVV RNLNQGSNVM SLDFHPVQQT ILLVGTNVGD IGIWEVGSRE RIAHKTFKVW DISSCTLPLQ
0401: AALMKDAAIS VNRCLWSPDG SILGVAFSKH IVQTYAFVLN GELRQQAEID AHIGGVNDIA FSHPNKTLSI ITCGDDKLIK VWDAQTGQKQ YTFEGHEAPV
0501: YSVCPHYKES IQFIFSTAID GKIKAWLYDC LGSRVDYDAP GHWCTTMAYS ADGTRLFSCG TSKDGDSHLV EWNETEGAIK RTYNGFRKRS LGVVQFDTTR
0601: NRFLAAGDEF VVKFWDMDNT NILTTTDCDG GLPASPRLRF NREGSLLAVT ANENGIKILA NTDGQRLLRM LESRAYEGSR GPPQQINTKP PIVNTLGSVS
0701: NVSSPMAVNS ERPDRALPTV SMSGLAPMDV SRTPDVKPRI TDESEKVKTW KLADIGDSGH LRALRMPDTS ATSSKVVRLL YTNNGVALLA LGSNAVHKLW
0801: KWQRTDRNPN GKSTASFTPQ MWQPANGILM ANDTSDGNPE EATACIALSK NDSYVMSASG GKVSLFNMMT FKVMTTFMAP PPAATFLAFH PQDNNIIAIG
0901: MEDSTIQIYN VRVDEVKSKL KGHSKKITGL AFSQSMNMLV SSGADAQLCA WSIDGWEKKK SRYIQSPANR SGALVGDTRV QFHNDQTHIL VVHESQLAIY
1001: DAKLECLRSW SPREALPAPI SSAIYSCDGL LIYAGFCDGA IGVFEAESLR LRCRIAPSAY IPPSMSSGGS VYPMVVAAHP LEPNQIAVGM SDGAVHVVEP
1101: LDSDPKWGVA PPQDNGTHPT ISAAPAAANK PEV

Best Arabidopsis Sequence Match ( AT1G80490.3 )
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEDEVHNGNW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDRHDR PKAVDILVKD
0101: LKVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPTLRTSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCRLPNDA RAPSPVNNPL LGSLPKAEGF PPLGAHGPFQ PTPSPVPTPL AGWMSSPSSV PHPAVSGGPI ALGAPSIQAA LKHPRTPPSN SAVDYPSGDS
0301: DHVSKRTRPM GISDEVSLGV NMLPMTFPGQ AHGHNQTFKA PDDLPKTVAR TLSQGSSPMS MDFHPIKQTL LLVGTNVGDI GLWEVGSRER LVQKTFKVWD
0401: LSKCSMPLQA ALVKEPVVSV NRVIWSPDGS LFGVAYSRHI VQLYSYHGGE DMRQHLEIDA HVGGVNDIAF STPNKQLCVT TCGDDKTIKV WDAATGVKRY
0501: TFEGHEAPVY SICPHYKENI QFIFSTALDG KIKAWLYDNM GSRVDYEAPG RWCTTMAYSA DGTRLFSCGT SKDGESFIVE WNESEGAVKR TYQGFHKRSL
0601: GVVQFDTTKN RYLAAGDDFS IKFWDMDTIQ LLTAIDADGG LQASPRIRFN KEGSLLAVSA NDNMIKVMAN SDGLRLLHTV ENLSSESSKP AINSIPMVER
0701: PASVVSIPGM NGDSRNMVDV KPVITEESND KSKVWKLTEV GEPSQCRSLR LPENMRVTKI SRLIFTNSGN AILALASNAI HLLWKWQRND RNATGKATAS
0801: LPPQQWQPAS GILMTNDVAE TNPEEAVPCF ALSKNDSYVM SASGGKISLF NMMTFKTMAT FMPPPPAATF LAFHPQDNNI IAIGMDDSTI QIYNVRVDEV
0901: KSKLKGHSKR ITGLAFSNVL NVLVSSGADA QLCVWNTDGW EKQKSKVLQI PQGRSTSSLS DTRVQFHQDQ VHFLVVHETQ LAIYETTKLE CMKQWPVRES
1001: AAPITHATFS CDSQLIYTSF MDATICVFSS ANLRLRCRVN PSAYLPASLS NSNVHPLVIA AHPQESNMFA VGLSDGGVHI FEPLESEGKW GVAPPPENGS
1101: ASAVTATPSV GASASDQPQR

Arabidopsis Description

TPR1Topless-related protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WV90]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.