Factsheet for GSMUA_Achr4P04560_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P11600_001	Banana	cytosol	85.62	87.87
GSMUA_Achr4P12340_001	Banana	cytosol	84.33	86.56
GSMUA_Achr4P05650_001	Banana	cytosol	83.39	85.97
GSMUA_Achr1P10830_001	Banana	cytosol	82.02	83.89
Os08t0162100-01	Rice	nucleus	80.22	82.7
GSMUA_Achr1P15450_001	Banana	cytosol	57.88	82.24
KXG24503	Sorghum	cytosol	79.97	82.07
TraesCS7D01G293500.1	Wheat	golgi	79.71	81.81
TraesCS7A01G296100.6	Wheat	cytosol	79.71	81.81
TraesCS7B01G189300.1	Wheat	cytosol	79.54	81.63
HORVU7Hr1G066930.5	Barley	cytosol	79.45	81.55
Zm00001d024523_P003	Maize	cytosol	79.71	80.75
VIT_16s0039g02410.t01	Wine grape	cytosol	74.74	76.92
Solyc08g076030.2.1	Tomato	nucleus	72.86	74.98
GSMUA_Achr1P15460_001	Banana	endoplasmic reticulum, extracellular	25.0	73.55
GSMUA_Achr4P09920_001	Banana	cytosol	64.3	65.3
GSMUA_Achr6P36440_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	63.96	64.73
GSMUA_AchrUn_...	Banana	cytosol	60.79	62.12
GSMUA_Achr11P...	Banana	cytosol	58.82	60.53
GSMUA_Achr6P22950_001	Banana	plasma membrane	64.13	60.5
GSMUA_Achr2P00320_001	Banana	cytosol	59.42	58.17

Protein Annotations

MapMan:11.2.2.2	MapMan:15.5.53.1	Gene3D:2.130.10.10	InterPro:CTLH_C	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr4G04560_001	EnsemblPlants:GSMUA_Achr4P04560_001	EnsemblPlants:GSMUA_Achr4T04560_001	InterPro:IPR001680	InterPro:IPR006594
InterPro:IPR006595	InterPro:IPR015943	InterPro:IPR017986	InterPro:LisH	UniProt:M0SL23	PFAM:PF00400
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PFscan:PS50896	PFscan:PS50897	PANTHER:PTHR44083
PANTHER:PTHR44083:SF5	SMART:SM00320	SMART:SM00667	SMART:SM00668	SUPFAM:SSF50978	InterPro:Topless_fam
UniParc:UPI0002951D9E	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
SEG:seg	:	:	:	:	:

Description

Protein TOPLESS [Source:GMGC_GENE;Acc:GSMUA_Achr4G04560_001]

Coordinates

chr4:+:3618426..3635291

Molecular Weight (calculated)

128513.0 Da

IEP (calculated)

7.181

GRAVY (calculated)

-0.235

Length

1168 amino acids

Sequence
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ DSGFYFNMKH FEDLVQAGEW DEVEKYLSGF TKVEDNRYSM KIFFEIRKQK YLEALDKHDR AKGVDILMKD
0101: LKAFASFNEE LFKEITHLLT LENFRQNEQL SKYGDTKSAR NIMFMELKKL IEANPLLHDK LTFPPFRASR LRTLINQRYA FPFLIHLSPI PCPSQLQFHL
0201: NWQHQLCKNP RPNPDIKTLF TDHSCAAAPA SGARVPPPTN GPLVGAIPKS GAFPPIGAHS PFQPIVSPPA SAIAGWMTNA NPSLPHAVVA QAPPGLVQPP
0301: STAAFLKHPR TPTSAPGLDY QTADSEYLMK RMRMGQSDEV SFSGASHPPN IYSQDDIPKT VIRTLNQGSS VMSLDFHPLH QTILLGIGTN VGDIGIWEVG
0401: SRERIAHKSF KVWDIGSLFK SLFLSNLQAA LMKDASVSVN RCLWSPDGSI LGVAFSKHIV QTYAFSLSGE LKQQLEIDAH VGGVNDIAFS HPKKSLSIIT
0501: CGDDKTIKVW DAITGQKQYT FEGHEAPVYS VCPHYKESIQ FIFSTATDGK INAWLYDCLG SRVDYDAPGH SCTTMAYSTD GTRLFSCGTS KDGDSHLVEW
0601: NETEGAIKRT YSGFRKHSLG VVQFDTTRNR LLAAGDEFMI KFWDMDNTNV LITTDADGGL PASPRLRFNR EGSLLAVTTS DNGIKILANG DGQRLVRLLE
0701: MRALENSRGA SQQINANLKP QIVSALGTVS NVSSPIAATL ERADRILPAV SMSSLAAMDN NRTADIKPKI SDDTDKIKNW KLVDIVDSAN PRTLRLPDTL
0801: ATSTKVVRLL YTNSGLGVLA LGSNAIHKLW KWTRTERNPS GKSTASVAPQ LWQPSNGVLM ANETSDSNPE EATACIALSK NDSYVMSASG GKVSLFNMMT
0901: FKVMTTFMPP PPAATFLAFH PQDNNIIAIG MEDSTIQIYN VRFDEVKIKL KGHQKKITGL AFSQPLNVLI SSGADTQLCM WSIDGWEMKK SRIIQTPATH
1001: AAPMVGDTKI QFHNDQTHLL VVHESQLAIY DNKLESLCSW LPRDALPAPI SSAVYSCDGL LVYAGFCDGA IGVFESDSLR LRCRIARTAY ISPSISSPGA
1101: AYPMVIAAHP SEPNQIALGM SDGAVHVVEP SEADSKWGVA LPQENGAFPP VSSNPPLNNS QASDPPPR

Best Arabidopsis Sequence Match ( AT1G15750.1 )
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEDEVHNGNW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDKHDR PKAVDILVKD
0101: LKVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPTLRNSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCGPPNGA RAPSPVNNPL LGGIPKAGGF PPLGAHGPFQ PTASPVPTPL AGWMSSPSSV PHPAVSAGAI ALGGPSIPAA LKHPRTPPTN ASLDYPSADS
0301: EHVSKRTRPM GISDEVNLGV NMLPMSFSGQ AHGHSPAFKA PDDLPKTVAR TLSQGSSPMS MDFHPIKQTL LLVGTNVGDI GLWEVGSRER LVQKTFKVWD
0401: LSKCSMPLQA ALVKEPVVSV NRVIWSPDGS LFGVAYSRHI VQLYSYHGGE DMRQHLEIDA HVGGVNDISF STPNKQLCVI TCGDDKTIKV WDAATGVKRH
0501: TFEGHEAPVY SVCPHYKENI QFIFSTALDG KIKAWLYDNM GSRVDYDAPG RWCTTMAYSA DGTRLFSCGT SKDGESFIVE WNESEGAVKR TYQGFHKRSL
0601: GVVQFDTTKN RYLAAGDDFS IKFWDMDAVQ LLTAIDGDGG LQASPRIRFN KEGSLLAVSG NENVIKIMAN SDGLRLLHTF ENISSESSKP AINSIAAAAA
0701: AAATSAGHAD RSANVVSIQG MNGDSRNMVD VKPVITEESN DKSKIWKLTE VSEPSQCRSL RLPENLRVAK ISRLIFTNSG NAILALASNA IHLLWKWQRN
0801: ERNATGKATA SLPPQQWQPA SGILMTNDVA ETNPEEAVPC FALSKNDSYV MSASGGKISL FNMMTFKTMA TFMPPPPAAT FLAFHPQDNN IIAIGMDDST
0901: IQIYNVRVDE VKSKLKGHSK RITGLAFSNV LNVLVSSGAD AQLCVWNTDG WEKQRSKVLP LPQGRPNSAP SDTRVQFHQD QAHFLVVHET QLAIYETTKL
1001: ECMKQWAVRE SLAPITHATF SCDSQLVYAS FMDATVCVFS SANLRLRCRV NPSAYLPASL SNSNVHPLVI AAHPQEPNMF AVGLSDGGVH IFEPLESEGK
1101: WGVAPPAENG SASGAPTAPS VGASASDQPQ R

Arabidopsis Description

TPLProtein TOPLESS [Source:UniProtKB/Swiss-Prot;Acc:Q94AI7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.