Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400077797 | Potato | cytosol | 13.85 | 56.7 |
| Solyc03g117370.2.1 | Tomato | cytosol | 52.14 | 51.11 |
| GSMUA_Achr4P12340_001 | Banana | cytosol | 77.58 | 27.07 |
| GSMUA_Achr4P05650_001 | Banana | cytosol | 76.83 | 26.92 |
| GSMUA_Achr4P11600_001 | Banana | cytosol | 75.31 | 26.27 |
| GSMUA_Achr1P10830_001 | Banana | cytosol | 74.06 | 25.74 |
| GSMUA_Achr4P04560_001 | Banana | cytosol | 73.55 | 25.0 |
| KXG21335 | Sorghum | cytosol | 54.41 | 23.84 |
| GSMUA_Achr4P09920_001 | Banana | cytosol | 61.21 | 21.13 |
| GSMUA_Achr11P... | Banana | cytosol | 58.94 | 20.62 |
| GSMUA_Achr6P36440_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 58.44 | 20.1 |
| GSMUA_Achr2P00320_001 | Banana | cytosol | 59.45 | 19.78 |
| GSMUA_AchrUn_... | Banana | cytosol | 56.93 | 19.77 |
| GSMUA_Achr6P22950_001 | Banana | plasma membrane | 60.45 | 19.39 |
| GSMUA_Achr1P15450_001 | Banana | cytosol | 2.77 | 1.34 |
| HORVU7Hr1G022460.1 | Barley | cytosol | 0.0 | 0.0 |
| HORVU7Hr1G022450.2 | Barley | cytosol, nucleus, peroxisome, plastid | 0.0 | 0.0 |
| VIT_04s0008g06350.t01 | Wine grape | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr1G15460_001 |
| EnsemblPlants:GSMUA_Achr1P15460_001 | EnsemblPlants:GSMUA_Achr1T15460_001 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | UniProt:M0S054 |
| PFAM:PF00400 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR44083 | PANTHER:PTHR44083:SF5 | SMART:SM00320 |
| SUPFAM:SSF50978 | InterPro:Topless_fam | UniParc:UPI0002948504 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom |
| InterPro:WD40_repeat_dom_sf | : | : | : | : | : |
Description
Topless-related protein 3 [Source:GMGC_GENE;Acc:GSMUA_Achr1G15460_001]
Coordinates
chr1:+:11618467..11621326
Molecular Weight (calculated)
43476.0 Da
IEP (calculated)
6.934
GRAVY (calculated)
-0.035
Length
397 amino acids
Sequence
(BLAST)
(BLAST)
001: MFMSKYLFNL LSFFVPSWLS FEFQNFGWLH MVYALVVRLL YTNSGFAVLA LGSNAIHKLW KWVRNERNPS GKSNASVAPQ LWQPSNGALM TNETTDTNPE
101: EVTPCIALSK NDSYVMSGSG GKISLFNMMT FKVMTTFMAP PPAATFLAFH PQDNNIIAIG MEDSSIQIYN VRVDEVKTKL KGHQKKITGL AFSQTLNVLL
201: SSGADAQLCM WSIDGWEKKK SRFIQAPASR ASPLVGDTKV QFHNDQTHFL VVHESQLAIY DSKLECLCLW SPRDVLSAPI SSAIYSCDGL LVYAGFSDGA
301: IGVFEADSLR LRCRVAPSAY LSLSIQSSAA VFPMVIAAHP SEPNQIALGM SDGAVYVLEP SDADLKWGSA PPQENGARPS ISNPASNSNQ TSEPPPR
101: EVTPCIALSK NDSYVMSGSG GKISLFNMMT FKVMTTFMAP PPAATFLAFH PQDNNIIAIG MEDSSIQIYN VRVDEVKTKL KGHQKKITGL AFSQTLNVLL
201: SSGADAQLCM WSIDGWEKKK SRFIQAPASR ASPLVGDTKV QFHNDQTHFL VVHESQLAIY DSKLECLCLW SPRDVLSAPI SSAIYSCDGL LVYAGFSDGA
301: IGVFEADSLR LRCRVAPSAY LSLSIQSSAA VFPMVIAAHP SEPNQIALGM SDGAVYVLEP SDADLKWGSA PPQENGARPS ISNPASNSNQ TSEPPPR
0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEDEVHNGNW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDRHDR PKAVDILVKD
0101: LKVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPTLRTSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCRLPNDA RAPSPVNNPL LGSLPKAEGF PPLGAHGPFQ PTPSPVPTPL AGWMSSPSSV PHPAVSGGPI ALGAPSIQAL KHPRTPPSNS AVDYPSGDSD
0301: HVSKRTRPMG ISDEVSLGVN MLPMTFPGQA HGHNQTFKAP DDLPKTVART LSQGSSPMSM DFHPIKQTLL LVGTNVGDIG LWEVGSRERL VQKTFKVWDL
0401: SKCSMPLQAA LVKEPVVSVN RVIWSPDGSL FGVAYSRHIV QLYSYHGGED MRQHLEIDAH VGGVNDIAFS TPNKQLCVTT CGDDKTIKVW DAATGVKRYT
0501: FEGHEAPVYS ICPHYKENIQ FIFSTALDGK IKAWLYDNMG SRVDYEAPGR WCTTMAYSAD GTRLFSCGTS KDGESFIVEW NESEGAVKRT YQGFHKRSLG
0601: VVQFDTTKNR YLAAGDDFSI KFWDMDTIQL LTAIDADGGL QASPRIRFNK EGSLLAVSAN DNMIKVMANS DGLRLLHTVE NLSSESSKPA INSIPMVERP
0701: ASVVSIPGMN GDSRNMVDVK PVITEESNDK SKVWKLTEVG EPSQCRSLRL PENMRVTKIS RLIFTNSGNA ILALASNAIH LLWKWQRNDR NATGKATASL
0801: PPQQWQPASG ILMTNDVAET NPEEAVPCFA LSKNDSYVMS ASGGKISLFN MMTFKTMATF MPPPPAATFL AFHPQDNNII AIGMDDSTIQ IYNVRVDEVK
0901: SKLKGHSKRI TGLAFSNVLN VLVSSGADAQ LCVWNTDGWE KQKSKVLQIP QGRSTSSLSD TRVQFHQDQV HFLVVHETQL AIYETTKLEC MKQWPVRESA
1001: APITHATFSC DSQLIYTSFM DATICVFSSA NLRLRCRVNP SAYLPASLSN SNVHPLVIAA HPQESNMFAV GLSDGGVHIF EPLESEGKWG VAPPPENGSA
1101: SAVTATPSVG ASASDQPQR
0101: LKVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPTLRTSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCRLPNDA RAPSPVNNPL LGSLPKAEGF PPLGAHGPFQ PTPSPVPTPL AGWMSSPSSV PHPAVSGGPI ALGAPSIQAL KHPRTPPSNS AVDYPSGDSD
0301: HVSKRTRPMG ISDEVSLGVN MLPMTFPGQA HGHNQTFKAP DDLPKTVART LSQGSSPMSM DFHPIKQTLL LVGTNVGDIG LWEVGSRERL VQKTFKVWDL
0401: SKCSMPLQAA LVKEPVVSVN RVIWSPDGSL FGVAYSRHIV QLYSYHGGED MRQHLEIDAH VGGVNDIAFS TPNKQLCVTT CGDDKTIKVW DAATGVKRYT
0501: FEGHEAPVYS ICPHYKENIQ FIFSTALDGK IKAWLYDNMG SRVDYEAPGR WCTTMAYSAD GTRLFSCGTS KDGESFIVEW NESEGAVKRT YQGFHKRSLG
0601: VVQFDTTKNR YLAAGDDFSI KFWDMDTIQL LTAIDADGGL QASPRIRFNK EGSLLAVSAN DNMIKVMANS DGLRLLHTVE NLSSESSKPA INSIPMVERP
0701: ASVVSIPGMN GDSRNMVDVK PVITEESNDK SKVWKLTEVG EPSQCRSLRL PENMRVTKIS RLIFTNSGNA ILALASNAIH LLWKWQRNDR NATGKATASL
0801: PPQQWQPASG ILMTNDVAET NPEEAVPCFA LSKNDSYVMS ASGGKISLFN MMTFKTMATF MPPPPAATFL AFHPQDNNII AIGMDDSTIQ IYNVRVDEVK
0901: SKLKGHSKRI TGLAFSNVLN VLVSSGADAQ LCVWNTDGWE KQKSKVLQIP QGRSTSSLSD TRVQFHQDQV HFLVVHETQL AIYETTKLEC MKQWPVRESA
1001: APITHATFSC DSQLIYTSFM DATICVFSSA NLRLRCRVNP SAYLPASLSN SNVHPLVIAA HPQESNMFAV GLSDGGVHIF EPLESEGKWG VAPPPENGSA
1101: SAVTATPSVG ASASDQPQR
Arabidopsis Description
TPR1Topless-related protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WV90]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.