Factsheet for GSMUA_Achr4P09920_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P36440_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	91.04	90.73
Os03t0254700-01	Rice	cytosol	83.91	85.17
EER92538	Sorghum	cytosol	82.96	84.8
TraesCS4D01G221200.1	Wheat	cytosol	82.87	84.04
TraesCS4B01G220900.3	Wheat	cytosol	82.96	83.98
TraesCS4A01G083300.2	Wheat	cytosol	82.87	83.96
Zm00001d047897_P013	Maize	cytosol	82.43	83.82
HORVU0Hr1G008690.1	Barley	cytosol, endoplasmic reticulum	82.78	83.8
GSMUA_Achr6P22950_001	Banana	plasma membrane	90.17	83.76
Zm00001d028481_P017	Maize	cytosol	82.26	83.64
KRH44501	Soybean	cytosol	81.48	82.7
KRH23604	Soybean	endoplasmic reticulum	81.3	82.6
KRH47407	Soybean	cytosol	80.96	82.39
VIT_09s0002g08370.t01	Wine grape	cytosol	81.04	81.9
KRH09700	Soybean	cytosol	79.74	81.15
AT1G15750.3	Thale cress	cytosol	78.96	80.28
CDY36584	Canola	cytosol	78.0	80.23
Bra003569.1-P	Field mustard	cytosol	75.91	80.17
CDX81729	Canola	cytosol	77.74	80.04
Bra026112.1-P	Field mustard	cytosol	77.91	80.0
CDY33387	Canola	cytosol	77.74	79.96
AT1G80490.2	Thale cress	cytosol	77.83	79.91
CDY53312	Canola	cytosol	76.09	79.84
Bra026751.1-P	Field mustard	cytosol	78.26	79.65
CDX67950	Canola	cytosol	77.74	79.54
CDX79383	Canola	cytosol	77.22	79.29
PGSC0003DMT400036648	Potato	plastid	58.87	77.19
PGSC0003DMT400036646	Potato	cytosol, plastid	20.09	75.49
GSMUA_Achr4P05650_001	Banana	cytosol	67.48	68.49
GSMUA_Achr4P12340_001	Banana	cytosol	67.65	68.37
GSMUA_Achr4P11600_001	Banana	cytosol	66.52	67.22
GSMUA_Achr1P10830_001	Banana	cytosol	66.26	66.72
GSMUA_Achr1P15450_001	Banana	cytosol	46.61	65.21
GSMUA_Achr4P04560_001	Banana	cytosol	65.3	64.3
PGSC0003DMT400036649	Potato	cytosol	26.7	63.04
VIT_04s0008g06380.t01	Wine grape	cytosol	9.65	61.67
GSMUA_Achr11P...	Banana	cytosol	60.61	61.41
GSMUA_Achr1P15460_001	Banana	endoplasmic reticulum, extracellular	21.13	61.21
GSMUA_Achr2P00320_001	Banana	cytosol	61.65	59.43
Solyc05g016070.1.1	Tomato	cytosol	6.35	55.73
VIT_04s0008g06330.t01	Wine grape	extracellular	54.17	54.79
VIT_04s0008g06400.t01	Wine grape	mitochondrion	9.65	54.68
VIT_04s0008g06340.t01	Wine grape	cytosol	8.0	53.49
GSMUA_AchrUn_...	Banana	cytosol	52.61	52.93
KRH61732	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	47.22	51.23
KRH52398	Soybean	cytosol	46.87	51.14
KRH05196	Soybean	cytosol	23.22	49.17
VIT_04s0008g06390.t01	Wine grape	extracellular	8.52	44.75
CDX79301	Canola	cytosol	5.74	30.41

Protein Annotations

MapMan:11.2.2.2	MapMan:15.5.53.1	Gene3D:2.130.10.10	InterPro:CTLH_C	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr4G09920_001	EnsemblPlants:GSMUA_Achr4P09920_001	EnsemblPlants:GSMUA_Achr4T09920_001	InterPro:IPR001680	InterPro:IPR006594
InterPro:IPR006595	InterPro:IPR015943	InterPro:IPR017986	InterPro:LisH	UniProt:M0SMK9	PFAM:PF00400
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PFscan:PS50896	PFscan:PS50897	PANTHER:PTHR44083
PANTHER:PTHR44083:SF4	SMART:SM00320	SMART:SM00667	SMART:SM00668	SUPFAM:SSF50978	InterPro:Topless_fam
UniParc:UPI000295E7DA	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
SEG:seg	:	:	:	:	:

Description

Protein TOPLESS [Source:GMGC_GENE;Acc:GSMUA_Achr4G09920_001]

Coordinates

chr4:-:7211858..7221085

Molecular Weight (calculated)

127131.0 Da

IEP (calculated)

7.153

GRAVY (calculated)

-0.260

Length

1150 amino acids

Sequence
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFYFNMKY FEDEVHNGNW DNVERYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDKHDR SKAVEILVKD
0101: LKVFASFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR TIMLVELKKL IEANPLFRDK LQFPNLKSSR LRTLINQRIR CAGYLLNIID ETSILNWQHQ
0201: LCKNPRPNPD IKTLFVDHSC GQPNGALAPS PVNNSLLGSM PKAGGFPPLG AHGPFQPAPA PVPMPLAGWM SNPSAVTHPA VSGGAIGLNA PTNPVAILKH
0301: PRTPPTANPG IEYASADSDH VSKRTRPIGI SDEVNLPVNI LPVSYPQSHN QATYTLEDLP KTVARTLSQG SNPMSMDFHP VQQTILLVGT NVGDIALWDV
0401: GTRERLILKN FKVWELGSCS MSLQASLVKD PAVSVNRIIW SPDGSLFGVA YSRHIVQIYS YHGGDDIRQH LEIEAHVGGV NDIAFAYPSK QLSVITCGDD
0501: KTIKVWDATS GTKQYTFEGH EAPVYSVCPH HKENIQAFIF STALDGKIKA WLYDNLGSRV DYDAPGHWCT TMAYSADGSR LFSCGTSKEG ETFIVEWNES
0601: EGAVKRTYQG FRKRSLGVVQ FDTTRNRFLA AGDEFLIKFW DMDNTNILTT VDADGGLPAS PRIRFNKEGT LLAISTHDNG IKILANTDGL RLLRTLENRS
0701: FDASRTVSET VTKPVISPLS AAASAATSSG IITPPMAIAG MNGDSRNLVD AKPRITDESM DKSKIWKLTE VNEPTQCRSL RLVDNLRTSK ISRLIYTNSG
0801: IAILALASNA IHLLWKWPRN ERNSSGKATA SVAPQLWQPP SGILMTNEIT DTNPEEAVHC FALSKNDSYV MSASGGKISL FNMMTFKTMT TFMAPPPAAT
0901: FLAFHPQDNN IIAIGMEDST IQIYNVRVDE VKSKLRGHSK RITGLAFSNV LNVLVSSGAD AQLCLWGTDG WEKHRSRFLQ IPPGRTPAAI SDTRVQFHQD
1001: QIHFLAVHET QIALYETTKL ECVKQWAPRE GSAPISHATF SCDSQLIYAS FLDATICVFN ATNFRLRCRI LPAAYLPASV STTLYPLVIA AHPSEPNQFA
1101: LGLTDGGVHV LEPLESEGKW GVNPPTDNGS ASSISAPLPA GASNSDQPQR

Best Arabidopsis Sequence Match ( AT1G15750.3 )
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEDEVHNGNW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDKHDR PKAVDILVKD
0101: LKVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPTLRNSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCGPPNGA RAPSPVNNPL LGGIPKAGGF PPLGAHGPFQ PTASPVPTPL AGWMSSPSSV PHPAVSAGAI ALGGPSIPAA LKHPRTPPTN ASLDYPSADS
0301: EHVSKRTRPM GISDEVNLGV NMLPMSFSGQ AHGHSPAFKA PDDLPKTVAR TLSQGSSPMS MDFHPIKQTL LLVGTNVGDI GLWEVGSRER LVQKTFKVWD
0401: LSKCSMPLQA ALVKEPVVSV NRVIWSPDGS LFGVAYSRHI VQLYSYHGGE DMRQHLEIDA HVGGVNDISF STPNKQLCVI TCGDDKTIKV WDAATGVKRH
0501: TFEGHEAPVY SVCPHYKENI QFIFSTALDG KIKAWLYDNM GSRVDYDAPG RWCTTMAYSA DGTRLFSCGT SKDGESFIVE WNESEGAVKR TYQGFHKRSL
0601: GVVQFDTTKN RYLAAGDDFS IKFWDMDAVQ LLTAIDGDGG LQASPRIRFN KEGSLLAVSG NENVIKIMAN SDGLRLLHTF ENISSESSKP AINSIAAAAA
0701: AAATSAGHAD RSANVVSIQG MNGDSRNMVD VKPVITEESN DKSKIWKLTE VSEPSQCRSL RLPENLRVAK ISRLIFTNSG NAILALASNA IHLLWKWQRN
0801: ERNATGKATA SLPPQQWQPA SGILMTNDVA ETNPEEAVPC FALSKNDSYV MSASGGKISL FNMMTFKTMA TFMPPPPAAT FLAFHPQDNN IIAIGMDDST
0901: IQIYNVRVDE VKSKLKGHSK RITGLAFSNV LNVLVSSGAD AQLCVWNTDG WEKQRSKVLP LPQGRPNSAP SDTRVQFHQD QAHFLVVHET QLAIYETTKL
1001: ECMKQWAVRE SLAPITHATF SCDSQLVYAS FMDATVCVFS SANLRLRCRV NPSAYLPASL SNSNVHPLVI AAHPQEPNMF AVGLSDGGVH IFEPLESEGK
1101: WGVAPPAENG SASGAPTAPS VGASASDQPQ R

Arabidopsis Description

TPLProtein TOPLESS [Source:UniProtKB/Swiss-Prot;Acc:Q94AI7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.