Factsheet for VIT_04s0008g06330.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0008g06340.t01	Wine grape	cytosol	9.23	61.05
VIT_09s0002g08370.t01	Wine grape	cytosol	56.29	56.24
VIT_04s0008g06380.t01	Wine grape	cytosol	8.88	56.11
Os03t0254700-01	Rice	cytosol	55.15	55.34
TraesCS4D01G221200.1	Wheat	cytosol	54.35	54.5
TraesCS4A01G083300.2	Wheat	cytosol	54.35	54.45
HORVU0Hr1G008690.1	Barley	cytosol, endoplasmic reticulum	54.35	54.4
TraesCS4B01G220900.3	Wheat	cytosol	54.27	54.31
EER92538	Sorghum	cytosol	53.74	54.31
GSMUA_Achr4P09920_001	Banana	cytosol	54.79	54.17
VIT_04s0008g06350.t01	Wine grape	cytosol	6.33	53.73
GSMUA_Achr6P36440_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	54.35	53.55
VIT_11s0016g05620.t01	Wine grape	cytosol	50.66	50.88
VIT_09s0002g07020.t01	Wine grape	cytosol	50.57	50.53
VIT_16s0039g02410.t01	Wine grape	cytosol	49.96	50.04
GSMUA_Achr6P22950_001	Banana	plasma membrane	54.0	49.6
KRH61732	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	46.0	49.34
VIT_14s0060g01680.t01	Wine grape	cytosol	48.81	49.03
KRH52398	Soybean	cytosol	44.77	48.29
VIT_04s0008g06400.t01	Wine grape	mitochondrion	8.62	48.28
KRH05196	Soybean	cytosol	22.96	48.07
VIT_04s0008g06390.t01	Wine grape	extracellular	8.36	43.38
VIT_04s0008g06360.t01	Wine grape	cytosol	2.9	42.86
PGSC0003DMT400028457	Potato	cytosol	43.45	41.86
Solyc08g029050.2.1	Tomato	cytosol	43.18	40.21
Zm00001d050983_P001	Maize	cytosol	8.18	37.2
Zm00001d004623_P001	Maize	cytosol, plastid	8.27	34.81
Zm00001d045829_P001	Maize	mitochondrion	9.15	31.9
Zm00001d027915_P001	Maize	cytosol	8.53	31.29
VIT_04s0008g06370.t01	Wine grape	cytosol	9.5	30.34
Zm00001d052868_P001	Maize	cytosol, peroxisome, plasma membrane	5.98	28.81

Protein Annotations

EntrezGene:100254390	wikigene:100254390	MapMan:11.2.2.2	MapMan:15.5.53.1	Gene3D:2.130.10.10	ProteinID:CBI21117
ProteinID:CBI21117.3	InterPro:CTLH_C	UniProt:D7SV18	EMBL:FN595231	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR001680	InterPro:IPR006594	InterPro:IPR006595	InterPro:IPR015943	InterPro:IPR017986
EntrezGene:LOC100254390	wikigene:LOC100254390	InterPro:LisH	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PFscan:PS50896	PFscan:PS50897	PANTHER:PTHR44083	PANTHER:PTHR44083:SF2	InterPro:Quinoprotein_ADH-like_supfam
SMART:SM00320	SMART:SM00667	SMART:SM00668	SUPFAM:SSF101898	SUPFAM:SSF50978	SUPFAM:SSF50998
InterPro:Topless_fam	UniParc:UPI0001BE1B10	ArrayExpress:VIT_04s0008g06330	EnsemblPlantsGene:VIT_04s0008g06330	EnsemblPlants:VIT_04s0008g06330.t01	unigene:Vvi.2270
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002283169
RefSeq:XP_002283169.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4:-:6200586..6211094

Molecular Weight (calculated)

125978.0 Da

IEP (calculated)

5.616

GRAVY (calculated)

-0.166

Length

1137 amino acids

Sequence
(BLAST)

0001: MNSGSADRGT AIGVMSLSKE LVFLILQFLD EENLKETAHI LERETGYFFD MKYFEGLALS GNWDEVERYL SGFTKVEDNK FSLKIYFEIR KQKFLEALDN
0101: HDGSKALGIL VNDLKVFASY NEDLYKEMTQ LLTTDDFRKH ESLSTYRDTN SARIIMMKDL KKVIEANPLF RGKLKFPNFR SQRLRRLINQ SLNWQHVHCS
0201: YPQPDPVIKT LFLDHVCQPL DNHSIVNNPP PSEVASAPVP TSPSSCTFTP STVTHSAVSA GTVGLCAPRN PAETLEELKD SESLSKSGTL ETLDEVTSGF
0301: TYPGQGQSSV FRLPDDFPKL VQKTLNEGSS PVSMDFHPVQ STLLIVGTIV GDIGLWEVLS GEKLLSRSFK VWDIGACSPI FKAAMVKDPC VSVKCIRWSP
0401: DGSIFGVAYS KHILQLYSYG GASDVQPKLE FDAHVGGVND LAFCAPDKKL MVISCGDDKI VKVWDAVNGV KMFTFEGHEA SVYSVLPHTK ERIHFIFSTS
0501: VDGKIKAWLY DNLGARVDFD APGHWCTTMA YSDDNKRIFS CGTSKDGESF LVEWNETEGS LKRIYQGLRK PSIGILQFDT AKNQFLAVGD DHLIKLWDMD
0601: NLELLTTIDA DGDLPASPCV RFNKEGTLLA VFAKGNRIKI LANDSSPKLQ QTSENNYLAS SSLSEILSEL SISQISSVGS AGMEDGGLPV NEGTRSLENV
0701: KPILTEEVNG NISNIYYPPQ FQFLSLPAKT NKVSSLIYNN AGDSILALGS NVHVVWKWPQ NDLNMSGKAT TKIPPQLWKP KGRSQLIGDY SAGTNPADVV
0801: ACFVFSKNDS YGISASGGKI SVFNMLTYKK MTTFMSSPPM ATFLALHPQD NNIIAVGLDD STIVIYNVRN DEVENKLKGH FGKITGLAFS EVLNVLVSSG
0901: ADAQIVVWNY DGWERVNSRS MQIPDEGPPL SDIRIQFHQD QIHFLAVHDT CLAIYEAKKL ECIGQWVTGK FSAEISHATF SSDSQLVYAI FLDGTASVFN
1001: TPNFHLQCRI DFNACIPLDI RCDVYPLVVA AHPNNPNQFA VGLSNGGIHI IEPLESVGKW TALPPVSLKL SFSQEELLQV TLFERGKSAG YLARHFGEAP
1101: VTFEKENRWC DPLSLDFICN YMVTLQKSSF EKSIFSS

Best Arabidopsis Sequence Match ( AT1G15750.1 )
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEDEVHNGNW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDKHDR PKAVDILVKD
0101: LKVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPTLRNSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCGPPNGA RAPSPVNNPL LGGIPKAGGF PPLGAHGPFQ PTASPVPTPL AGWMSSPSSV PHPAVSAGAI ALGGPSIPAA LKHPRTPPTN ASLDYPSADS
0301: EHVSKRTRPM GISDEVNLGV NMLPMSFSGQ AHGHSPAFKA PDDLPKTVAR TLSQGSSPMS MDFHPIKQTL LLVGTNVGDI GLWEVGSRER LVQKTFKVWD
0401: LSKCSMPLQA ALVKEPVVSV NRVIWSPDGS LFGVAYSRHI VQLYSYHGGE DMRQHLEIDA HVGGVNDISF STPNKQLCVI TCGDDKTIKV WDAATGVKRH
0501: TFEGHEAPVY SVCPHYKENI QFIFSTALDG KIKAWLYDNM GSRVDYDAPG RWCTTMAYSA DGTRLFSCGT SKDGESFIVE WNESEGAVKR TYQGFHKRSL
0601: GVVQFDTTKN RYLAAGDDFS IKFWDMDAVQ LLTAIDGDGG LQASPRIRFN KEGSLLAVSG NENVIKIMAN SDGLRLLHTF ENISSESSKP AINSIAAAAA
0701: AAATSAGHAD RSANVVSIQG MNGDSRNMVD VKPVITEESN DKSKIWKLTE VSEPSQCRSL RLPENLRVAK ISRLIFTNSG NAILALASNA IHLLWKWQRN
0801: ERNATGKATA SLPPQQWQPA SGILMTNDVA ETNPEEAVPC FALSKNDSYV MSASGGKISL FNMMTFKTMA TFMPPPPAAT FLAFHPQDNN IIAIGMDDST
0901: IQIYNVRVDE VKSKLKGHSK RITGLAFSNV LNVLVSSGAD AQLCVWNTDG WEKQRSKVLP LPQGRPNSAP SDTRVQFHQD QAHFLVVHET QLAIYETTKL
1001: ECMKQWAVRE SLAPITHATF SCDSQLVYAS FMDATVCVFS SANLRLRCRV NPSAYLPASL SNSNVHPLVI AAHPQEPNMF AVGLSDGGVH IFEPLESEGK
1101: WGVAPPAENG SASGAPTAPS VGASASDQPQ R

Arabidopsis Description

TPLProtein TOPLESS [Source:UniProtKB/Swiss-Prot;Acc:Q94AI7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.