Factsheet for VIT_04s0008g06340.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0008g06350.t01	Wine grape	cytosol	46.51	59.7
VIT_04s0008g06380.t01	Wine grape	cytosol	43.6	41.67
VIT_04s0008g06360.t01	Wine grape	cytosol	12.79	28.57
CDX79301	Canola	cytosol	25.58	20.28
VIT_04s0008g06330.t01	Wine grape	extracellular	61.05	9.23
VIT_11s0016g05620.t01	Wine grape	cytosol	55.81	8.48
Os03t0254700-01	Rice	cytosol	55.23	8.38
TraesCS4B01G220900.3	Wheat	cytosol	55.23	8.36
EER92538	Sorghum	cytosol	54.65	8.36
TraesCS4D01G221200.1	Wheat	cytosol	54.65	8.29
TraesCS4A01G083300.2	Wheat	cytosol	54.65	8.28
HORVU0Hr1G008690.1	Barley	cytosol, endoplasmic reticulum	54.65	8.27
VIT_09s0002g08370.t01	Wine grape	cytosol	54.65	8.26
VIT_16s0039g02410.t01	Wine grape	cytosol	54.07	8.19
GSMUA_Achr4P09920_001	Banana	cytosol	53.49	8.0
VIT_09s0002g07020.t01	Wine grape	cytosol	52.91	8.0
VIT_14s0060g01680.t01	Wine grape	cytosol	52.33	7.95
GSMUA_Achr6P36440_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	52.91	7.89
GSMUA_Achr6P22950_001	Banana	plasma membrane	52.91	7.35
PGSC0003DMT400028457	Potato	cytosol	44.77	6.53
Solyc08g029050.2.1	Tomato	cytosol	44.77	6.31
VIT_04s0008g06370.t01	Wine grape	cytosol	11.05	5.34
Zm00001d045829_P001	Maize	mitochondrion	4.07	2.15
Zm00001d050983_P001	Maize	cytosol	1.74	1.2
Zm00001d004623_P001	Maize	cytosol, plastid	1.74	1.11
Zm00001d027915_P001	Maize	cytosol	1.74	0.97
Zm00001d052868_P001	Maize	cytosol, peroxisome, plasma membrane	1.16	0.85
VIT_04s0008g06400.t01	Wine grape	mitochondrion	0.58	0.49
VIT_04s0008g06390.t01	Wine grape	extracellular	0.58	0.46

Protein Annotations

EntrezGene:100853413	wikigene:100853413	MapMan:35.1	EMBL:AM479573	ProteinID:CAN81741	ProteinID:CAN81741.1
ProteinID:CCB46855	ProteinID:CCB46855.1	InterPro:CTLH_C	UniProt:F6H3W6	EMBL:FN595231	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR006595
EntrezGene:LOC100853413	wikigene:LOC100853413	PFscan:PS50897	PANTHER:PTHR44083	SMART:SM00668	InterPro:Topless_fam
UniParc:UPI00021097FB	ArrayExpress:VIT_04s0008g06340	EnsemblPlantsGene:VIT_04s0008g06340	EnsemblPlants:VIT_04s0008g06340.t01	RefSeq:XP_003631798	RefSeq:XP_003631798.1

Description

No Description!

Coordinates

chr4:+:6237423..6238322

Molecular Weight (calculated)

20231.1 Da

IEP (calculated)

6.296

GRAVY (calculated)

-0.544

Length

172 amino acids

Sequence
(BLAST)

001: MILKFLEDKN FEETAHTLER ESGLFFNLEY FEELALNGEW NEAEKYMSGF TKIEDNKFST KIYFEMRKQK YLETLDKREH DKAVEILSND LKVFAQYNSE
101: LYKEMALLIT VDDFRKHASL TKYGDTRSAR ASIFREIKKG IEANPVFQGK FRVPAVAARV GQWSLQMSNL QI

Best Arabidopsis Sequence Match ( AT1G15750.1 )
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEDEVHNGNW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDKHDR PKAVDILVKD
0101: LKVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPTLRNSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCGPPNGA RAPSPVNNPL LGGIPKAGGF PPLGAHGPFQ PTASPVPTPL AGWMSSPSSV PHPAVSAGAI ALGGPSIPAA LKHPRTPPTN ASLDYPSADS
0301: EHVSKRTRPM GISDEVNLGV NMLPMSFSGQ AHGHSPAFKA PDDLPKTVAR TLSQGSSPMS MDFHPIKQTL LLVGTNVGDI GLWEVGSRER LVQKTFKVWD
0401: LSKCSMPLQA ALVKEPVVSV NRVIWSPDGS LFGVAYSRHI VQLYSYHGGE DMRQHLEIDA HVGGVNDISF STPNKQLCVI TCGDDKTIKV WDAATGVKRH
0501: TFEGHEAPVY SVCPHYKENI QFIFSTALDG KIKAWLYDNM GSRVDYDAPG RWCTTMAYSA DGTRLFSCGT SKDGESFIVE WNESEGAVKR TYQGFHKRSL
0601: GVVQFDTTKN RYLAAGDDFS IKFWDMDAVQ LLTAIDGDGG LQASPRIRFN KEGSLLAVSG NENVIKIMAN SDGLRLLHTF ENISSESSKP AINSIAAAAA
0701: AAATSAGHAD RSANVVSIQG MNGDSRNMVD VKPVITEESN DKSKIWKLTE VSEPSQCRSL RLPENLRVAK ISRLIFTNSG NAILALASNA IHLLWKWQRN
0801: ERNATGKATA SLPPQQWQPA SGILMTNDVA ETNPEEAVPC FALSKNDSYV MSASGGKISL FNMMTFKTMA TFMPPPPAAT FLAFHPQDNN IIAIGMDDST
0901: IQIYNVRVDE VKSKLKGHSK RITGLAFSNV LNVLVSSGAD AQLCVWNTDG WEKQRSKVLP LPQGRPNSAP SDTRVQFHQD QAHFLVVHET QLAIYETTKL
1001: ECMKQWAVRE SLAPITHATF SCDSQLVYAS FMDATVCVFS SANLRLRCRV NPSAYLPASL SNSNVHPLVI AAHPQEPNMF AVGLSDGGVH IFEPLESEGK
1101: WGVAPPAENG SASGAPTAPS VGASASDQPQ R

Arabidopsis Description

TPLProtein TOPLESS [Source:UniProtKB/Swiss-Prot;Acc:Q94AI7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.