Factsheet for VIT_09s0002g08370.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 2
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH44501	Soybean	cytosol	89.02	89.41
KRH47407	Soybean	cytosol	88.58	89.2
KRH23604	Soybean	endoplasmic reticulum	88.14	88.6
KRH09700	Soybean	cytosol	86.03	86.64
Solyc03g117360.2.1	Tomato	nucleus	85.33	85.93
CDY36584	Canola	cytosol	84.27	85.78
CDY53312	Canola	cytosol	82.6	85.77
AT1G15750.3	Thale cress	cytosol	85.06	85.59
CDX81729	Canola	cytosol	84.01	85.59
Bra026112.1-P	Field mustard	cytosol	84.18	85.54
AT1G80490.2	Thale cress	cytosol	84.01	85.36
CDY33387	Canola	cytosol	83.74	85.24
Bra026751.1-P	Field mustard	cytosol	84.53	85.13
Bra003569.1-P	Field mustard	cytosol	81.46	85.12
CDX67950	Canola	cytosol	83.83	84.88
CDX79383	Canola	cytosol	83.3	84.64
GSMUA_Achr4P09920_001	Banana	cytosol	81.9	81.04
Os03t0254700-01	Rice	cytosol	80.58	80.94
EER92538	Sorghum	cytosol	79.96	80.89
TraesCS4D01G221200.1	Wheat	cytosol	80.32	80.6
HORVU0Hr1G008690.1	Barley	cytosol, endoplasmic reticulum	80.4	80.55
TraesCS4A01G083300.2	Wheat	cytosol	80.32	80.53
TraesCS4B01G220900.3	Wheat	cytosol	80.14	80.28
GSMUA_Achr6P36440_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	81.11	79.98
VIT_11s0016g05620.t01	Wine grape	cytosol	75.04	75.44
GSMUA_Achr6P22950_001	Banana	plasma membrane	81.28	74.72
VIT_09s0002g07020.t01	Wine grape	cytosol	72.58	72.58
VIT_16s0039g02410.t01	Wine grape	cytosol	68.54	68.72
VIT_14s0060g01680.t01	Wine grape	cytosol	62.57	62.9
VIT_04s0008g06380.t01	Wine grape	cytosol	9.84	62.22
VIT_04s0008g06400.t01	Wine grape	mitochondrion	10.63	59.61
VIT_04s0008g06330.t01	Wine grape	extracellular	56.24	56.29
VIT_04s0008g06340.t01	Wine grape	cytosol	8.26	54.65
VIT_04s0008g06350.t01	Wine grape	cytosol	6.33	53.73
Zm00001d050983_P001	Maize	cytosol	10.98	50.0
VIT_04s0008g06390.t01	Wine grape	extracellular	9.14	47.49
Zm00001d004623_P001	Maize	cytosol, plastid	11.16	47.04
VIT_04s0008g06360.t01	Wine grape	cytosol	3.16	46.75
Zm00001d027915_P001	Maize	cytosol	11.25	41.29
Zm00001d045829_P001	Maize	mitochondrion	11.07	38.65
VIT_04s0008g06370.t01	Wine grape	cytosol	11.78	37.64
Zm00001d052868_P001	Maize	cytosol, peroxisome, plasma membrane	7.12	34.32

Protein Annotations

EntrezGene:100248092	wikigene:100248092	MapMan:11.2.2.2	MapMan:15.5.53.1	Gene3D:2.130.10.10	ProteinID:CBI36431
ProteinID:CBI36431.3	InterPro:CTLH_C	UniProt:D7TZB7	EMBL:FN596494	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR001680	InterPro:IPR006594	InterPro:IPR006595	InterPro:IPR015943	InterPro:IPR017986
EntrezGene:LOC100248092	wikigene:LOC100248092	InterPro:LisH	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PFscan:PS50896	PFscan:PS50897	PANTHER:PTHR44083	PANTHER:PTHR44083:SF2	InterPro:Quinoprotein_ADH-like_supfam
SMART:SM00320	SMART:SM00667	SMART:SM00668	SUPFAM:SSF50978	SUPFAM:SSF50998	TIGR:TC63505
InterPro:Topless_fam	UniParc:UPI00019859DC	ArrayExpress:VIT_09s0002g08370	EnsemblPlantsGene:VIT_09s0002g08370	EnsemblPlants:VIT_09s0002g08370.t01	unigene:Vvi.8958
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002268265
RefSeq:XP_002268265.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr9:-:9246440..9256248

Molecular Weight (calculated)

125031.0 Da

IEP (calculated)

7.135

GRAVY (calculated)

-0.302

Length

1138 amino acids

Sequence
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEDEVHSGNW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDKHDR SKAVEILVKD
0101: LKVFATFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPHLKNSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHTCGQPNGA RAPSPANNPL LGSLPKAGGF PPLGAHGPFQ PTPAPVPTPL WMSNPSTVTH PAVSGGPIGL GAPSIPAALK HPRTPPTNPS VDYPSGDSEH
0301: VAKRGRPMGI SDEVNLPVNV LPVTFPGHGH SQAFNAPDDL PKTLVRNLTQ GSSPMSMDFH PVQQTLLLVG TNVGDIGLWE VGSKQKLVSR NFKVWDIGAC
0401: SVPLQAALAK DPGVSVNRII WSPDGSLFGV AYSRHIVQIY SYHGGDDVRQ HLEIDAHAGG VNDLAFSHPN KQLCVITCGD DKTIKVWDAT NGTKQYTFEG
0501: HEDAVYSVCP HYKENIQFIF STALDGKIKA WLYDNLGSRV DYDAPGRWCT TMAYSADGTR LFSCGTSKDG DSYIVEWNES EGAVKRTYQG FRKRSLGVVQ
0601: FDTTKNRFLA AGDDFSIKFW DMDNIQLLTI LDAEGGLPGL PASPRIRFNK DGTLLAVSAN ENSIKILANS DGLRLLRTFD NLSYDASRAS ESVTKPAINS
0701: ISAAAAAAAA TSAGLADRGA SVVAIAGMNG DARNMGDVKP RLAEETNDKS KIWKLTEINE TSQCRSLRLQ ENLRITKISR LIYTNSGNAI LALASNAIHF
0801: LWKWQRNDRN SSGKATATVS PQLWQPTSGI LMTNDVADTN PEEAVPCFAL SKNDSYVMSA SGGKISLFNM MTFKTMTTFM PPPPAATFLA FHPQDNNIIA
0901: IGMDDSTIQI YNVRVDEVKS KLKGHSKRIT GLAFSHVLNV LVSSGADAQL CVWSSDGWEK QKSRFLQVPA GRTSTGQSDT RVQFHQDQTH FLVVHETQLA
1001: IYEATKLDCV KQWVQREAAA PISHATFSCD SLLVYASFLD ATVCVFSAAN LRLRCRINPT AYLPASVSNS NVHPLVIAAH PQEPNQFALG LSDGGVCVFE
1101: PLESEGKWGV PPPVENGSAS SVPATPSVGP SGSDQPQR

Best Arabidopsis Sequence Match ( AT1G15750.3 )
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEDEVHNGNW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDKHDR PKAVDILVKD
0101: LKVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPTLRNSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCGPPNGA RAPSPVNNPL LGGIPKAGGF PPLGAHGPFQ PTASPVPTPL AGWMSSPSSV PHPAVSAGAI ALGGPSIPAA LKHPRTPPTN ASLDYPSADS
0301: EHVSKRTRPM GISDEVNLGV NMLPMSFSGQ AHGHSPAFKA PDDLPKTVAR TLSQGSSPMS MDFHPIKQTL LLVGTNVGDI GLWEVGSRER LVQKTFKVWD
0401: LSKCSMPLQA ALVKEPVVSV NRVIWSPDGS LFGVAYSRHI VQLYSYHGGE DMRQHLEIDA HVGGVNDISF STPNKQLCVI TCGDDKTIKV WDAATGVKRH
0501: TFEGHEAPVY SVCPHYKENI QFIFSTALDG KIKAWLYDNM GSRVDYDAPG RWCTTMAYSA DGTRLFSCGT SKDGESFIVE WNESEGAVKR TYQGFHKRSL
0601: GVVQFDTTKN RYLAAGDDFS IKFWDMDAVQ LLTAIDGDGG LQASPRIRFN KEGSLLAVSG NENVIKIMAN SDGLRLLHTF ENISSESSKP AINSIAAAAA
0701: AAATSAGHAD RSANVVSIQG MNGDSRNMVD VKPVITEESN DKSKIWKLTE VSEPSQCRSL RLPENLRVAK ISRLIFTNSG NAILALASNA IHLLWKWQRN
0801: ERNATGKATA SLPPQQWQPA SGILMTNDVA ETNPEEAVPC FALSKNDSYV MSASGGKISL FNMMTFKTMA TFMPPPPAAT FLAFHPQDNN IIAIGMDDST
0901: IQIYNVRVDE VKSKLKGHSK RITGLAFSNV LNVLVSSGAD AQLCVWNTDG WEKQRSKVLP LPQGRPNSAP SDTRVQFHQD QAHFLVVHET QLAIYETTKL
1001: ECMKQWAVRE SLAPITHATF SCDSQLVYAS FMDATVCVFS SANLRLRCRV NPSAYLPASL SNSNVHPLVI AAHPQEPNMF AVGLSDGGVH IFEPLESEGK
1101: WGVAPPAENG SASGAPTAPS VGASASDQPQ R

Arabidopsis Description

TPLProtein TOPLESS [Source:UniProtKB/Swiss-Prot;Acc:Q94AI7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.