CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36584	Canola	cytosol	99.46	99.46
Bra026112.1-P	Field mustard	cytosol	99.55	99.38
CDY53312	Canola	cytosol	95.97	97.9
CDX81729	Canola	cytosol	97.67	97.76
AT1G15750.3	Thale cress	cytosol	97.23	96.11
CDX67950	Canola	cytosol	92.84	92.35
CDX79383	Canola	cytosol	92.13	91.96
KRH23604	Soybean	endoplasmic reticulum	84.79	83.75
VIT_09s0002g08370.t01	Wine grape	cytosol	85.24	83.74
KRH44501	Soybean	cytosol	84.62	83.5
KRH47407	Soybean	cytosol	84.35	83.45
KRH09700	Soybean	cytosol	82.74	81.86
Solyc03g117360.2.1	Tomato	nucleus	81.93	81.06
GSMUA_Achr4P09920_001	Banana	cytosol	79.96	77.74
TraesCS4D01G221200.1	Wheat	cytosol	78.26	77.16
EER92538	Sorghum	cytosol	77.64	77.16
Os03t0254700-01	Rice	cytosol	78.18	77.14
TraesCS4A01G083300.2	Wheat	cytosol	78.18	77.0
HORVU0Hr1G008690.1	Barley	cytosol, endoplasmic reticulum	78.0	76.76
TraesCS4B01G220900.3	Wheat	cytosol	77.91	76.67
GSMUA_Achr6P36440_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	78.89	76.43
GSMUA_Achr6P22950_001	Banana	plasma membrane	78.98	71.32
CDX82426	Canola	cytosol	70.04	69.11
CDX75851	Canola	cytosol	69.86	68.93
CDY20161	Canola	cytosol	69.23	68.31
CDY21881	Canola	cytosol	69.05	68.14
CDY67912	Canola	cytosol	35.96	67.68
CDX92100	Canola	cytosol	62.88	62.1
CDX95900	Canola	cytosol	62.97	61.97
CDY25010	Canola	cytosol	61.18	61.51
CDY05552	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	61.0	61.39
CDX80607	Canola	cytosol	61.09	61.15
CDX88252	Canola	cytosol	60.47	60.96
CDY50502	Canola	cytosol, plastid	62.97	55.35
CDY50500	Canola	cytosol	24.33	53.86
CDY04683	Canola	mitochondrion	5.55	50.0
Zm00001d050983_P001	Maize	cytosol	10.64	47.6
Zm00001d004623_P001	Maize	cytosol, plastid	10.73	44.44
Zm00001d027915_P001	Maize	cytosol	11.0	39.68
Zm00001d045829_P001	Maize	mitochondrion	10.91	37.42
Zm00001d052868_P001	Maize	cytosol, peroxisome, plasma membrane	7.51	35.59
CDX83225	Canola	cytosol	21.65	32.35
CDY38509	Canola	cytosol	21.65	31.59
CDX79301	Canola	cytosol	5.99	30.88
CDY12727	Canola	golgi	8.23	26.51

Protein Annotations

MapMan:11.2.2.2	MapMan:15.5.53.1	Gene3D:2.130.10.10	GO:A0A078H7J3	UniProt:A0A078H7J3	EnsemblPlants:CDY33387
ProteinID:CDY33387	ProteinID:CDY33387.1	InterPro:CTLH_C	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
EnsemblPlantsGene:GSBRNA2T00054238001	InterPro:IPR001680	InterPro:IPR006594	InterPro:IPR006595	InterPro:IPR015943	InterPro:IPR017986
InterPro:LisH	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PFscan:PS50896
PFscan:PS50897	PANTHER:PTHR44083	PANTHER:PTHR44083:SF2	InterPro:Quinoprotein_ADH-like_supfam	SMART:SM00320	SMART:SM00667
SMART:SM00668	SUPFAM:SSF50998	SUPFAM:SSF63829	InterPro:Topless_fam	UniParc:UPI0004EE51B5	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	SEG:seg	:	:

Description

BnaC05g11960DBnaC05g11960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H7J3]

Coordinates

chrLK032312:+:407708..413563

Molecular Weight (calculated)

122978.0 Da

IEP (calculated)

7.237

GRAVY (calculated)

-0.307

Length

1118 amino acids

Sequence
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEDEVHNGNW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDKHDR PKAVEILVKD
0101: LKVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR SIMLVELKKL IEANPLFRDK LQFPTLRNSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCGPPNGA RAPSPVNNPL LGGIPKAGGF PPLGAHGPFQ PTASPVQTPL AGWMSSPSSV PHPAVSAGAI ALGGPSISAA LKHPRTPPTA LDYPSAESEH
0301: VSKRTRPMGI SDEVSLGAHG HSPAFKAPDD LPKTVARTLI QGSSPMSMDF HPIKQTLLLV GTNVGDIGLW EVGSRERLVQ KTFKVWDISK CSMPLQAALV
0401: KEPVVSVNRV IWSPDGSLFG VTYSRHIVQL YSYHGGEDMR QHLEIDAHVG GVNDISFSTP NKQLCVITCG DDKTIKVWDA ATGVKRHTFE GHEAPVYSIC
0501: PHYKENIQFI FSTALDGKIK AWLYDNMGSR VDYDAPGRWC TTMAYSADGT RLFSCGTSKD GESYIVEWNE SEGAVKRTYQ GFHKRSLGVV QFDTTKNRYL
0601: AAGDDFSIKF WDMDNVQLLT AIDGDGGLQA SPRIRFNKEG SLLAVSGNEN VIKVMANSDG LRLLHTFENV SSESSKPAIS SLAAAAAAAA TSAGLTDRPA
0701: NVVSIQGMNG DSRNMVDVKP VITEEPNDKS KIWKLTEVSE PSQCRSLRLP ENLRVAKISR LIFTNSGNAI LALASNAIHL LWKWQRNDRN ATGKATASLP
0801: PQQWQPASGI LMTNDAAENN PEEAVPCFAL SKNDSYVMSA SGGKISLFNM MTFKTMATFM PPPPAATFLA FHPQDNNIIA IGMDDSTIQI YNVRVDEVKS
0901: KLKGHSKRIT GLAFSNVLNV LVSSGADAQL CVWNTDGWEK QRSKVLPLPQ GRPNTAPSDT RVQFHQDQAH FLVVHETQLA IYETTKLECM KQWPVRESSA
1001: PITHATFSCD SQLVYASFMD ATICVFSSAN LRLRCRVNPS AYLPASLSNS NVHPLVIAAH PQEPNMFAVG LSDGGVHIFE PVESEGKWGV APPAENGSAS
1101: GAAAAPSVGA SASDQPQR

Best Arabidopsis Sequence Match ( AT1G15750.3 )
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEDEVHNGNW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDKHDR PKAVDILVKD
0101: LKVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPTLRNSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCGPPNGA RAPSPVNNPL LGGIPKAGGF PPLGAHGPFQ PTASPVPTPL AGWMSSPSSV PHPAVSAGAI ALGGPSIPAA LKHPRTPPTN ASLDYPSADS
0301: EHVSKRTRPM GISDEVNLGV NMLPMSFSGQ AHGHSPAFKA PDDLPKTVAR TLSQGSSPMS MDFHPIKQTL LLVGTNVGDI GLWEVGSRER LVQKTFKVWD
0401: LSKCSMPLQA ALVKEPVVSV NRVIWSPDGS LFGVAYSRHI VQLYSYHGGE DMRQHLEIDA HVGGVNDISF STPNKQLCVI TCGDDKTIKV WDAATGVKRH
0501: TFEGHEAPVY SVCPHYKENI QFIFSTALDG KIKAWLYDNM GSRVDYDAPG RWCTTMAYSA DGTRLFSCGT SKDGESFIVE WNESEGAVKR TYQGFHKRSL
0601: GVVQFDTTKN RYLAAGDDFS IKFWDMDAVQ LLTAIDGDGG LQASPRIRFN KEGSLLAVSG NENVIKIMAN SDGLRLLHTF ENISSESSKP AINSIAAAAA
0701: AAATSAGHAD RSANVVSIQG MNGDSRNMVD VKPVITEESN DKSKIWKLTE VSEPSQCRSL RLPENLRVAK ISRLIFTNSG NAILALASNA IHLLWKWQRN
0801: ERNATGKATA SLPPQQWQPA SGILMTNDVA ETNPEEAVPC FALSKNDSYV MSASGGKISL FNMMTFKTMA TFMPPPPAAT FLAFHPQDNN IIAIGMDDST
0901: IQIYNVRVDE VKSKLKGHSK RITGLAFSNV LNVLVSSGAD AQLCVWNTDG WEKQRSKVLP LPQGRPNSAP SDTRVQFHQD QAHFLVVHET QLAIYETTKL
1001: ECMKQWAVRE SLAPITHATF SCDSQLVYAS FMDATVCVFS SANLRLRCRV NPSAYLPASL SNSNVHPLVI AAHPQEPNMF AVGLSDGGVH IFEPLESEGK
1101: WGVAPPAENG SASGAPTAPS VGASASDQPQ R

Arabidopsis Description

TPLProtein TOPLESS [Source:UniProtKB/Swiss-Prot;Acc:Q94AI7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.