CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0008g06340.t01	Wine grape	cytosol	20.28	25.58
CDY67912	Canola	cytosol	27.19	9.93
KRH05196	Soybean	cytosol	19.35	7.73
CDX80607	Canola	cytosol	34.56	6.71
CDX88252	Canola	cytosol	34.1	6.67
CDY25010	Canola	cytosol	34.1	6.65
CDY05552	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	33.64	6.57
CDX92100	Canola	cytosol	33.64	6.45
CDX95900	Canola	cytosol	33.64	6.43
CDY12727	Canola	golgi	10.14	6.34
CDY53312	Canola	cytosol	31.34	6.2
CDX81729	Canola	cytosol	30.88	6.0
CDY33387	Canola	cytosol	30.88	5.99
CDY36584	Canola	cytosol	30.88	5.99
CDY20161	Canola	cytosol	30.88	5.91
CDY21881	Canola	cytosol	30.88	5.91
CDX67950	Canola	cytosol	30.41	5.87
EER92538	Sorghum	cytosol	30.41	5.87
CDX75851	Canola	cytosol	30.41	5.83
CDX82426	Canola	cytosol	30.41	5.83
TraesCS4D01G221200.1	Wheat	cytosol	30.41	5.82
TraesCS4A01G083300.2	Wheat	cytosol	30.41	5.81
TraesCS4B01G220900.3	Wheat	cytosol	30.41	5.81
HORVU0Hr1G008690.1	Barley	cytosol, endoplasmic reticulum	30.41	5.81
CDX79383	Canola	cytosol	29.95	5.8
GSMUA_Achr4P09920_001	Banana	cytosol	30.41	5.74
CDY50502	Canola	cytosol, plastid	33.64	5.74
Os03t0254700-01	Rice	cytosol	29.95	5.74
GSMUA_Achr6P36440_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	30.41	5.72
GSMUA_Achr6P22950_001	Banana	plasma membrane	31.8	5.57
KRH61732	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	25.35	5.19
KRH52398	Soybean	cytosol	24.88	5.12
CDY04683	Canola	mitochondrion	2.76	4.84
PGSC0003DMT400028457	Potato	cytosol	25.35	4.66
Solyc08g029050.2.1	Tomato	cytosol	25.35	4.5
CDY38509	Canola	cytosol	12.9	3.66
CDX83225	Canola	cytosol	12.44	3.61
Zm00001d027915_P001	Maize	cytosol	3.23	2.26
CDY50500	Canola	cytosol	5.07	2.18
Zm00001d004623_P001	Maize	cytosol, plastid	2.3	1.85
Zm00001d045829_P001	Maize	mitochondrion	2.76	1.84
Zm00001d050983_P001	Maize	cytosol	1.84	1.6
Zm00001d052868_P001	Maize	cytosol, peroxisome, plasma membrane	0.46	0.42

Protein Annotations

EnsemblPlants:CDX79301	EnsemblPlantsGene:GSBRNA2T00131960001	GO:A0A078CQ23	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Topless_fam	PANTHER:PTHR44083	PANTHER:PTHR44083:SF3
ProteinID:CDX79301	ProteinID:CDX79301.1	UniParc:UPI0004EEEEF0	MapMan:35.1	:	:

Description

BnaC06g20020D

Coordinates

chrLK031817:-:1178738..1180872

Molecular Weight (calculated)

25921.4 Da

IEP (calculated)

8.577

GRAVY (calculated)

-0.425

Length

217 amino acids

Sequence
(BLAST)

001: MEFRDCLINV RHRYLNLQSR PIDSSPLSYF LTSSTQVDHD LTLNVAYPFA RRCLYSYKRE FWEAKNFKHG GELTMVNIYM LLLDSKVMLR WSRNLFFSNI
101: MPFEEKGLAD EWEKVGMYLS GFNKLDDNRF SMEILFEIRT KKCQKVYEDL YKEMTQLLTR DHFREKTCLP QFPAFLPVNF DQSKVNVVNL KKEMEPKEWF
201: GGVWVLGKDK ARTSEIV

Best Arabidopsis Sequence Match ( AT3G16830.1 )
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKESVHKLEQ ESGFFFNIKY FEEKALAGEW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDRNDR AKAVEILAKD
0101: LKVFATFNEE LYKEITQLLT LENFRENEQL SKYGDTKSAR SIMYTELKKL IEANPLFREK LAFPSFKASR LRTLINQSLN WQHQLCKNPR PNPDIKTLFL
0201: DHSCSPSNGA RALTPVNLPV AAVARPSNFV PLGVHGGPFQ SNPAPAPNAN ALAGWMANPN PSSSVPSGVV AASPFPMQPS QVNELKHPRA PSNSLGLMDY
0301: QSADHEQLMK RLRSAQTSNE VTYPAHSHPP ASLDDLPRNV VSTIRQGSVV ISMDFHPSHH TLLAVGCSSG EVTLWEVGSR EKVVTEPFKI WNMAACSVIF
0401: QGSIVKEPSI SVTRVAWSPD GNLLGVSFTK HLIHVYAYQG SDLRQHLEID AHVGCVNDLA FAHPNKQMCV VTCGDDKLIK VWDLSGKKLF TFEGHEAPVY
0501: SICPHQKENI QFIFSTALDG KIKAWLYDNV GSRVDYDAPG QWCTTMLYSA DGSRLFSCGT SKEGDSFLVE WNESEGALKR TYLGFRKKSA GVVQFDTTRN
0601: RFLAVGEDNQ IKFWNMDNTN LLTVVEAEGG LPNLPRLRFN KDGNLLAVTT ADNGFKILAN TDGLRTLRAF EARSFEASKA SIDMKVSTSA MASSISPAIG
0701: KIEHMDAGSP ARPTPIPNGI EAMSRTMEKP RNLDSVDKSK PLELTEIVDP TQCRQVTMPD SKDSVSKVAR LLYTNSGVGV LALGSNGVQR LWKWIRNEQN
0801: PTGKATASVT PQHWQPNSGL LMANDVPENP EGSVPCIALS KNDSYVMSAC GGKVSLFNMM TFKVMTTFMP PPPASTFLAF HPQDNNIIAI GMEDSSIHIY
0901: NVRVDEVKTK LKGHQKHITG LAFSTALNIL VSSGADAQLF FWTADSWEKK KSSAIQLPPG KAPVGDTRVQ FHNDQIQLLV SHETQLAIYD ASKMECIHKW
1001: VPQEALSSPI TSASYSCNSQ LVYASFADGN IAVFDAESLR LRCRIAPSAY MPQPTPNSAP IFPQVITAHP QEPNQLAVGL SDGSVKVIEP SELSRRWGVG
1101: VAAGSDKAGT ENGRPSSSSA ANNSSSDQIQ R

Arabidopsis Description

TPR2Topless-related protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRZ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.